RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 KLF4O43474 513 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 HYAL3O43820 417 aaPredicted RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 IGKV1D-16P01601 117 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 CLPSP04118 112 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 THY1P04216 161 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 PRG2P13727 222 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 HTR2AP28223 471 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 MAP2K4P45985 399 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 SLC15A1P46059 708 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 RFX3P48380 749 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 DUSP3P51452 185 aaPredicted RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 SLC37A1P57057 533 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ST3GAL4Q11206 333 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 PERM1Q5SV97 790 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ZNF574Q6ZN55 896 aaPredicted RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 ZAR1Q86SH2 424 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 NRMQ8IXM6 262 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ZNF614Q8N883 585 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 BCORP1Q8N888 145 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ZNF527Q8NB42 609 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 WDR36Q8NI36 951 aaKnown RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 TMEM255BQ8WV15 326 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 FAM46AQ96IP4 442 aaKnown RBP13.12□□□□□ -0.31
LIG3-205ENST00000585941 GPA33Q99795 319 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 RHNO1Q9BSD3 238 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 CDCA4Q9BXL8 241 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 ITPAQ9BY32 194 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 SLC7A5P2Q9GIP4 190 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 TGIF2Q9GZN2 237 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 LRRN3Q9H3W5 708 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 GPR83Q9NYM4 423 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 IL20Q9NYY1 176 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 TVP23BQ9NYZ1 205 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 NTNG1Q9Y2I2 539 aa13.12□□□□□ -0.31
LIG3-205ENST00000585941 TECTAO75443 2155 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 DNAH14Q0VDD8 3507 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 IRGMA1A4Y4 181 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 OR2W5A6NFC9 320 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 EFCAB7A8K855 629 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 CNOT3O75175 753 aaKnown RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 RPLP0P05388 317 aaKnown RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 SYPP08247 313 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 IGFBP1P08833 259 aaPredicted RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 HBQ1P09105 142 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 GKN3PP0CG01 181 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 PSMB9P28065 219 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 RBM34P42696 430 aaKnown RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 NUDT6P53370 316 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 PSPHP78330 225 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 CCL7P80098 99 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 TMEM44Q2T9K0 475 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 RPL13AP3Q6NVV1 102 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 ZC3H14Q6PJT7 736 aaKnown RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 BPHLQ86WA6 291 aaPredicted RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 KIF18BQ86Y91 864 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 CYP4Z2PQ8N1L4 340 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 TCEANCQ8N8B7 351 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 LSMEM1Q8N8F7 131 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 PLPP5Q8NEB5 264 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 OR4N2Q8NGD1 307 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 TMEM239Q8WW34 195 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 CNOT9Q92600 299 aaKnown RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 IL4I1Q96RQ9 567 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 PRSS27Q9BQR3 290 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 AMBNQ9NP70 447 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 MED17Q9NVC6 651 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 DNAJB12Q9NXW2 375 aaKnown RBP13.11□□□□□ -0.31
LIG3-205ENST00000585941 SLC35A3Q9Y2D2 325 aa13.11□□□□□ -0.31
LIG3-205ENST00000585941 FRG2CA6NGY1 282 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 M0R129 80 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 CHP2O43745 196 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 ENTPD6O75354 484 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 ATE1O95260 518 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 LYPD3O95274 346 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 IGKV3-11P04433 115 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 ADH7P40394 386 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 LSM11P83369 360 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIG3-205ENST00000585941 EFNB1P98172 346 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 PRKCDQ05655 676 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 IRF3Q14653 427 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 NCF4Q15080 339 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 NSDHLQ15738 373 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 SNAPC1Q16533 368 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 PLAG1Q6DJT9 500 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 SLC23A3Q6PIS1 610 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 EID2Q8N6I1 236 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 DTWD2Q8NBA8 298 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 POGLUT1Q8NBL1 392 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 SLC2A12Q8TD20 617 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 YIPF6Q96EC8 236 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 UBQLN4Q9NRR5 601 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 CNIH4Q9P003 139 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 COPS7AQ9UBW8 275 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 RARRES3Q9UL19 164 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 ATXN7L1Q9ULK2 861 aaPredicted RBP13.1□□□□□ -0.31
LIG3-205ENST00000585941 MED31Q9Y3C7 131 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 CDH10Q9Y6N8 788 aa13.1□□□□□ -0.31
LIG3-205ENST00000585941 ADAMTS9Q9P2N4 1935 aa13.09□□□□□ -0.31
LIG3-205ENST00000585941 IGLV3-12A0A075B6K2 115 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms