RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 C12orf65Q9H3J6 166 aaKnown RBP13.03□□□□□ -0.32
SMARCE1-216ENST00000580419 SSU72Q9NP77 194 aaKnown RBP13.03□□□□□ -0.32
SMARCE1-216ENST00000580419 PLEKHA6Q9Y2H5 1048 aa13.03□□□□□ -0.32
SMARCE1-216ENST00000580419 PTGDR2Q9Y5Y4 395 aa13.03□□□□□ -0.32
SMARCE1-216ENST00000580419 RAI1Q7Z5J4 1906 aaPredicted RBP13.03□□□□□ -0.32
SMARCE1-216ENST00000580419 A0A1W2PRB8 838 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 ETV2O00321 342 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 SCDO00767 359 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PIP5K1BO14986 540 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 TYROBPO43914 113 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 SS18L1O75177 396 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 HMGN2P05204 90 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PABPC4LP0CB38 370 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 NID1P14543 1247 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 HPGDP15428 266 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 CD53P19397 219 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 ETV4P43268 484 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 ZNF41P51814 821 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 ADAM8P78325 824 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 POU6F2P78424 691 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PON3Q15166 354 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 CTU2Q2VPK5 515 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PLPPR5Q32ZL2 321 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PDSS1Q5T2R2 415 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 FBXW10Q5XX13 1052 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 VWA1Q6PCB0 445 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PRSS57Q6UWY2 283 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 DDIASQ8IXT1 998 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 UBQLNLQ8IYU4 475 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 COX18Q8N8Q8 333 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 TOR1AIP2Q8NFQ8 470 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 FNDC9Q8TBE3 224 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 TCP10LQ8TDR4 215 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 AENQ8WTP8 325 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 SLC9A6Q92581 669 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 PIGTQ969N2 578 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 MARK4Q96L34 752 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 USB1Q9BQ65 265 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 ACTRT3Q9BYD9 372 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 EQTNQ9NQ60 294 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 ZCCHC3Q9NUD5 404 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 BAIAP2L1Q9UHR4 511 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 MCTS1Q9ULC4 181 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 EMC9Q9Y3B6 208 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 FREM1Q5H8C1 2179 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 TLN2Q9Y4G6 2542 aa13.02□□□□□ -0.33
SMARCE1-216ENST00000580419 SMIM23A6NLE4 172 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 DUXAA6NLW8 204 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 C17orf51A8MQB3 221 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 NPIPB9F8W1W9 429 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 H3BML4 177 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 AKAP10O43572 662 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 DNAJA2O60884 412 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 AK1P00568 194 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 BPGMP07738 259 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 LINGO3P0C6S8 592 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 POU2F1P14859 743 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 FPR1P21462 350 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 ME2P23368 584 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 EMX2Q04743 252 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 FAM27E3Q08E93 113 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 STX5Q13190 355 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 GALNTL6Q49A17 601 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 KLHL26Q53HC5 615 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 SLC25A53Q5H9E4 307 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 ANKRD26P1Q6NSI1 321 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 CNEP1R1Q8N9A8 125 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 WFIKKN1Q96NZ8 548 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 MED17Q9NVC6 651 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 GPATCH2Q9NW75 528 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 PRDM4Q9UKN5 801 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 GPC6Q9Y625 555 aaPredicted RBP13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 PRR14LQ5THK1 2151 aa13.01□□□□□ -0.33
SMARCE1-216ENST00000580419 TLDC2A0PJX2 215 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 GJE1A6NN92 205 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 DEFB108AA8MXU0 73 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 H3BNH8 94 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 BIRC5O15392 142 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 SMNDC1O75940 238 aaKnown RBP eCLIP13□□□□□ -0.33
SMARCE1-216ENST00000580419 LAMP1P11279 417 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 CCT3P49368 545 aaKnown RBP13□□□□□ -0.33
SMARCE1-216ENST00000580419 PRKAG1P54619 331 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 CLDN8P56748 225 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 IFFO1Q0D2I5 559 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 SGCBQ16585 318 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 C20orf204Q6ZNR8 217 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 SSX8Q7RTT4 187 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 B4GALNT2Q8NHY0 566 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 ARSGQ96EG1 525 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 TACO1Q9BSH4 297 aaKnown RBP13□□□□□ -0.33
SMARCE1-216ENST00000580419 NMUR2Q9GZQ4 415 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 TIGARQ9NQ88 270 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 SLC17A7Q9P2U7 560 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 HAO1Q9UJM8 370 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 ICAM5Q9UMF0 924 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 FAF1Q9UNN5 650 aaPredicted RBP13□□□□□ -0.33
SMARCE1-216ENST00000580419 PROCRQ9UNN8 238 aa13□□□□□ -0.33
SMARCE1-216ENST00000580419 A0A1W2PPR1 153 aa12.99□□□□□ -0.33
SMARCE1-216ENST00000580419 TMEM233B4DJY2 109 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms