RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 UQCRC2P22695 453 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 ASCL1P50553 236 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 AGFG1P52594 562 aaKnown RBP21.58■■□□□ 1.05
SHMT1-206ENST00000579558 SLC9B1Q4ZJI4 515 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 HDXQ7Z353 690 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 MAVSQ7Z434 540 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 PHOSPHO1Q8TCT1 267 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 SMPDL3BQ92485 455 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 MAELQ96JY0 434 aaKnown RBP21.58■■□□□ 1.05
SHMT1-206ENST00000579558 ZFP3Q96NJ6 502 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 ZBTB18Q99592 522 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 ABCA12Q86UK0 2595 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 A0A087WZY1 265 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 SEC14L5O43304 696 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 HCRTR2O43614 444 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 IL12AP29459 219 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 OPRM1P35372 400 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF41P51814 821 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-206ENST00000579558 ATP12AP54707 1039 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 CASP9P55211 416 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 DLX5P56178 289 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 EEFSECP57772 596 aaKnown RBP21.57■■□□□ 1.04
SHMT1-206ENST00000579558 TMEM44Q2T9K0 475 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 P4HA3Q7Z4N8 544 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 MTERF4Q7Z6M4 381 aaKnown RBP21.57■■□□□ 1.04
SHMT1-206ENST00000579558 GOLGA6L1Q8N7Z2 621 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 B4GALNT2Q8NHY0 566 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 ACTRT2Q8TDY3 377 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 LRRC46Q96FV0 321 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 CCDC115Q96NT0 180 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 SDF2Q99470 211 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 OR51I1Q9H343 314 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 BTNL2Q9UIR0 455 aa21.57■■□□□ 1.04
SHMT1-206ENST00000579558 H3BNH8 94 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 RCBTB2O95199 551 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 IL18BPO95998 194 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 AK1P00568 194 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 IDO1P14902 403 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF17P17021 662 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 UQCRC1P31930 480 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 RNF144AP50876 292 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-206ENST00000579558 SUCLG1P53597 346 aaKnown RBP21.56■■□□□ 1.04
SHMT1-206ENST00000579558 TLE4Q04727 773 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 KLHL26Q53HC5 615 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF614Q8N883 585 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 CHDHQ8NE62 594 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-206ENST00000579558 MIPOL1Q8TD10 442 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 LRRC8CQ8TDW0 803 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 INTS12Q96CB8 462 aaKnown RBP21.56■■□□□ 1.04
SHMT1-206ENST00000579558 MARK4Q96L34 752 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 SH3GL2Q99962 352 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 SLC24A3Q9HC58 644 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 MED17Q9NVC6 651 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 AP4B1Q9Y6B7 739 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 APCP25054 2843 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 FBN2P35556 2912 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 LRBAP50851 2863 aa21.56■■□□□ 1.04
SHMT1-206ENST00000579558 EEF1E1-BLOC1S5C9J1V9 151 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 NPIPB9F8W1W9 429 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 H0YC42 278 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 SYT5O00445 386 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 EEF1E1O43324 174 aaKnown RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 PGRP06401 933 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 H2AFXP16104 143 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 CHI3L1P36222 383 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 TPD52P55327 224 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 CLDN15P56746 228 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 CLDN20P56880 219 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF117Q03924 483 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 FOXF2Q12947 444 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 PLPPR5Q32ZL2 321 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 PDCD4Q53EL6 469 aaKnown RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 DDX59Q5T1V6 619 aaKnown RBP eCLIP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 SAXO2Q658L1 398 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 TNFAIP8L2Q6P589 184 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 C16orf62Q7Z3J2 963 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 GCNT2Q8N0V5 402 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 GLB1L3Q8NCI6 653 aaPredicted RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 RNASE6Q93091 150 aaKnown RBP21.55■■□□□ 1.04
SHMT1-206ENST00000579558 ZBTB8AQ96BR9 441 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 C7orf26Q96N11 449 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 OR52B2Q96RD2 323 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 OR52E6Q96RD3 313 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 SLC35A5Q9BS91 424 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 SFXN3Q9BWM7 321 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 ACBD3Q9H3P7 528 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 EXD2Q9NVH0 621 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 STOML1Q9UBI4 398 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 DTNAQ9Y4J8 743 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 USH1CQ9Y6N9 552 aa21.55■■□□□ 1.04
SHMT1-206ENST00000579558 CSMD1Q96PZ7 3565 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 SLC22A20A6NK97 555 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF195O14628 629 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 DIAPH2O60879 1101 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 STX11O75558 287 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 TGM6O95932 706 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 AGR2O95994 175 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 OR12D1P0DN82 309 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 MYBPHQ13203 477 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 ARHGAP11BQ3KRB8 267 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms