RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF223Q9UK11 482 aaPredicted RBP9.37□□□□□ -0.91
VPS53-220ENST00000576149 MKL2Q9ULH7 1088 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 CBLCQ9ULV8 474 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 CMAHPQ9Y471 501 aa9.37□□□□□ -0.91
VPS53-220ENST00000576149 SNPHO15079 494 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 LRRTM2O43300 516 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 LYPD3O95274 346 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SLC2A10O95528 541 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SEMA4FO95754 770 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 IGHA1P01876 353 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CLEC2LP0C7M8 214 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 GKN3PP0CG01 181 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 HTR1FP30939 366 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 FGF9P31371 208 aaPredicted RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 SDC2P34741 201 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 RABIFP47224 123 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SLC9A3P48764 834 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SHC2P98077 582 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 ZNF155Q12901 538 aaPredicted RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 HNRNPA0Q13151 305 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 DSG2Q14126 1118 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CRTC2Q53ET0 693 aaPredicted RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 MRPL2Q5T653 305 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 CD200R1LQ6Q8B3 271 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 WDR88Q6ZMY6 472 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 RNF113BQ8IZP6 322 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 CA13Q8N1Q1 262 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CSNK1A1LQ8N752 337 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 BBS1Q8NFJ9 593 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 BRIX1Q8TDN6 353 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 TM9SF2Q99805 663 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 UBQLN3Q9H347 655 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 RERGLQ9H628 205 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 C8orf33Q9H7E9 229 aaPredicted RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 INIPQ9NRY2 104 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 PLEKHB1Q9UF11 243 aaPredicted RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 MUTYHQ9UIF7 546 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CSNK1G3Q9Y6M4 447 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SZT2Q5T011 3432 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 KIR2DS5A0A0G2JLQ3 304 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 A0A0G2JNG1 304 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CDHR4A6H8M9 788 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 UNC119BA6NIH7 251 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 OR5K4A6NMS3 321 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 H3BQ06 376 aaPredicted RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 KIR2DS3K7RE56 304 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 PEX12O00623 359 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 FMO6PO60774 539 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 LALBAP00709 142 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 APOA1P02647 267 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CT62P0C5K7 136 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 ZGLP1P0C6A0 271 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 PTNP21246 168 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 GCGRP47871 477 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 ACSM1Q08AH1 577 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SELENBP1Q13228 472 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 KIR2DS5Q14953 304 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 EXOSC7Q15024 291 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 OR1Q1Q15612 314 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 ZNF79Q15937 498 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CFAP161Q6P656 301 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 HSDL2Q6YN16 418 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 OR8H2Q8N162 312 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SETD6Q8TBK2 473 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 SLC37A2Q8TED4 501 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 CTHRC1Q96CG8 243 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 JAM3Q9BX67 310 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 GSDMCQ9BYG8 508 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 OR52D1Q9H346 318 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 FANCFQ9NPI8 374 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 HINT3Q9NQE9 182 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 TOR4AQ9NXH8 423 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 TBC1D24Q9ULP9 559 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 PAIP2BQ9ULR5 123 aaKnown RBP9.36□□□□□ -0.91
VPS53-220ENST00000576149 GSTK1Q9Y2Q3 226 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 FANCMQ8IYD8 2048 aa9.36□□□□□ -0.91
VPS53-220ENST00000576149 COL4A2P08572 1712 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 LRP4O75096 1905 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 NPIPA5A0A0B4J1W7 369 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 TRDV1A0A1B0GX56 115 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 NPIPA7E9PJI5 369 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 PRAMEF26H0Y7S4 382 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 J3QRE1 110 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 GPR37O15354 613 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 AK1P00568 194 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 IGHV4-34P06331 123 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 CELA2BP08218 269 aaPredicted RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 NPIPA8P0DM63 369 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 FXYD6P3P58550 94 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 FABP5Q01469 135 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 ZMAT1Q5H9K5 638 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 FIGNL1Q6PIW4 674 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 CXXC5Q7LFL8 322 aaKnown RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 CPOQ8IVL8 374 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 PSD4Q8NDX1 1056 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 TMEM239Q8WW34 195 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 ANKRD9Q96BM1 317 aaPredicted RBP9.35□□□□□ -0.91
VPS53-220ENST00000576149 TMCO6Q96DC7 493 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 KATNB1Q9BVA0 655 aa9.35□□□□□ -0.91
VPS53-220ENST00000576149 DPH1Q9BZG8 443 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms