RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GALNT10Q86SR1 603 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 GRAMD2AQ8IUY3 354 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 RIMKLAQ8IXN7 391 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 UBQLNLQ8IYU4 475 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 FADS6Q8N9I5 356 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OR8J2Q8NGG1 315 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OR5AK3PQ8NH89 298 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 GOT1L1Q8NHS2 421 aaPredicted RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 PSMA8Q8TAA3 256 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 DYDC1Q8WWB3 177 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 CDS1Q92903 461 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 TESCQ96BS2 214 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 C1GALT1C1Q96EU7 318 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OTUB1Q96FW1 271 aaPredicted RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 SLC35G5Q96KT7 338 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 ZFP3Q96NJ6 502 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 TM9SF2Q99805 663 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 ENKD1Q9H0I2 346 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 UBQLN4Q9NRR5 601 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 EXD2Q9NVH0 621 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 FLRT3Q9NZU0 649 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 ZNF629Q9UEG4 869 aaPredicted RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 PCNX1Q96RV3 2341 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 UQCRHLA0A096LP55 91 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 IGLV3-32A0A0A0MS00 114 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GOLGA8QA0A0J9YX86 632 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 PRSS51A0A1B0GVH4 220 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 A0A1W2PNR3 127 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GOLGA8OA6NCC3 632 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 MBD3L4A6NDZ8 208 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 MBD3L3A6NE82 208 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 MBD3L5A6NJ08 208 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 CLCA1A8K7I4 914 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 E9PBE3 544 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GOLGA8NF8WBI6 632 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 H3BML4 177 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 SEC14L5O43304 696 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GMFGO60234 142 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ZIC3O60481 467 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 SNNO75324 88 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 CPSF4O95639 269 aaKnown RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 AK1P00568 194 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 IGKV1D-16P01601 117 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 TMIGD3P0DMS9 266 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 ZNF708P17019 499 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 TBXA2RP21731 343 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 MATN1P21941 496 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 UQCRC2P22695 453 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 CTSSP25774 331 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ADH6P28332 368 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 EPHA3P29320 983 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 UQCRC1P31930 480 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 S100A3P33764 101 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 STARP49675 285 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 LHX2P50458 406 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ASCL1P50553 236 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ANXA11P50995 505 aaKnown RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 NME5P56597 212 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 WNT3P56703 355 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 EEF1A1P68104 462 aaKnown RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 HBA1P69905 142 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 HPCAP84074 193 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 LRRC74AQ0VAA2 488 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 BCL2A1Q16548 175 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 KRTAP21-3Q3LHN1 58 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 FAM174BQ3ZCQ3 159 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GLYR1Q49A26 553 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 FLYWCH1Q4VC44 716 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 CCNJQ5T5M9 372 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ATAD3BQ5T9A4 648 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 EEF1A1P5Q5VTE0 462 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 OR2A2Q6IF42 318 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 OGFOD2Q6N063 350 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 SEM1Q6ZVN7 128 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 C16orf62Q7Z3J2 963 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 C6orf120Q7Z4R8 191 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ANKRD46Q86W74 232 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 WDR75Q8IWA0 830 aaKnown RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 CLECL1Q8IZS7 167 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 TRIML2Q8N7C3 387 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ZNF614Q8N883 585 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GATSQ8NAP1 163 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GLB1L3Q8NCI6 653 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 TNIP2Q8NFZ5 429 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 B4GALNT2Q8NHY0 566 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 MBD3L2Q8NHZ7 208 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 PIWIL2Q8TC59 973 aaKnown RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 FAM110BQ8TC76 370 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 LRRC8CQ8TDW0 803 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ZBTB8AQ96BR9 441 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ATP6V1G3Q96LB4 118 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 OR7D2Q96RA2 312 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 TUBA1CQ9BQE3 449 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 ZNF559Q9BR84 538 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 AIG1Q9NVV5 245 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 GPATCH2Q9NW75 528 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 FOXD3Q9UJU5 478 aaPredicted RBP7.33□□□□□ -1.24
VPS53-214ENST00000572607 VDAC3Q9Y277 283 aa7.33□□□□□ -1.24
VPS53-214ENST00000572607 CACNA1CQ13936 2221 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 A0A1W2PQD3 144 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms