RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF136P52737 540 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 PIN1Q13526 163 aaPredicted RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 APOOLQ6UXV4 268 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 STK32CQ86UX6 486 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 TSPYL5Q86VY4 417 aaPredicted RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 SLC15A4Q8N697 577 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 OR5M3Q8NGP4 307 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 OR52J3Q8NH60 311 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 PHF10Q8WUB8 498 aaKnown RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 MCHR1Q99705 422 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 SLC35A3Q9Y2D2 325 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 CPAMD8Q8IZJ3 1885 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 CPSF4LA6NMK7 179 aaKnown RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 GADD45GO95257 159 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 SERPINA7P05543 415 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 NGFRP08138 427 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 UBTFL6P0CB48 400 aaPredicted RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 ZNF26P17031 533 aaPredicted RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 AQP4P55087 323 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 CHAF1BQ13112 559 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 LAPTM4AQ15012 233 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 CD226Q15762 336 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 TBC1D25Q3MII6 688 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 OTUD3Q5T2D3 398 aaPredicted RBP28.07■■■□□ 2.08
CTCF-203ENST00000566078 FNDC7Q5VTL7 733 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 TBPL2Q6SJ96 375 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 LYPD8Q6UX82 237 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 HIPK1Q86Z02 1210 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 CDCP1Q9H5V8 836 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 ACER3Q9NUN7 267 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 NTNG1Q9Y2I2 539 aa28.07■■■□□ 2.08
CTCF-203ENST00000566078 FREM2Q5SZK8 3169 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 DCHS1Q96JQ0 3298 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 EI24O14681 340 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 RASAL1O95294 804 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 PRG2P13727 222 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 SPINK2P20155 84 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 ARHGDIAP52565 204 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 TAS2R41P59536 307 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 FOXD4Q12950 439 aaPredicted RBP28.06■■■□□ 2.08
CTCF-203ENST00000566078 NDUFAF6Q330K2 333 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 PLEKHM3Q6ZWE6 761 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 PHOSPHO1Q8TCT1 267 aa28.06■■■□□ 2.08
CTCF-203ENST00000566078 BARD1Q99728 777 aaKnown RBP28.06■■■□□ 2.08
CTCF-203ENST00000566078 NMNAT1Q9HAN9 279 aaPredicted RBP28.06■■■□□ 2.08
CTCF-203ENST00000566078 TESQ9UGI8 421 aaKnown RBP28.06■■■□□ 2.08
CTCF-203ENST00000566078 CNOT11Q9UKZ1 510 aaKnown RBP28.06■■■□□ 2.08
CTCF-203ENST00000566078 MAN1A2O60476 641 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 H1F0P07305 194 aaKnown RBP28.05■■■□□ 2.08
CTCF-203ENST00000566078 FBXO45P0C2W1 286 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 FUT4P22083 530 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 EVI2BP34910 448 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 ADH7P40394 386 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 EXOC3L2Q2M3D2 409 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 ENTPD8Q5MY95 495 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 PPP4R4Q6NUP7 873 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 RPS19BP1Q86WX3 136 aaKnown RBP28.05■■■□□ 2.08
CTCF-203ENST00000566078 SLC5A8Q8N695 610 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 POGLUT1Q8NBL1 392 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 OR4C15Q8NGM1 316 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 HGDQ93099 445 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 FNDC11Q9BVV2 318 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 TBL1XR1Q9BZK7 514 aa28.05■■■□□ 2.08
CTCF-203ENST00000566078 A0A1W2PQD3 144 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 H3BNH8 94 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 CYP7B1O75881 506 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 UBL4AP11441 157 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 SOX3P41225 446 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 SRSF6Q13247 344 aaKnown RBP28.04■■■□□ 2.08
CTCF-203ENST00000566078 COLEC12Q5KU26 742 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 PACRGLQ8N7B6 248 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 NR4A3Q92570 626 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 ARSGQ96EG1 525 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 DHRS1Q96LJ7 313 aa28.04■■■□□ 2.08
CTCF-203ENST00000566078 YARS2Q9Y2Z4 477 aaKnown RBP28.04■■■□□ 2.08
CTCF-203ENST00000566078 ALG1L2C9J202 215 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 FADS1O60427 444 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 MLF1P58340 268 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 DCAF10Q5QP82 559 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 ZNF550Q7Z398 422 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 PIK3C3Q8NEB9 887 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 SLC35B4Q969S0 331 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 TMCO6Q96DC7 493 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 SPACA9Q96E40 222 aaPredicted RBP28.03■■■□□ 2.08
CTCF-203ENST00000566078 NRBF2Q96F24 287 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 NODALQ96S42 347 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 ZNF184Q99676 751 aaPredicted RBP28.03■■■□□ 2.08
CTCF-203ENST00000566078 C8orf4Q9NR00 106 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 PDP1Q9P0J1 537 aaPredicted RBP28.03■■■□□ 2.08
CTCF-203ENST00000566078 SPTBN2O15020 2390 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 SCO2O43819 266 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 HTR2AP28223 471 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 CLN3Q13286 438 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 FGD3Q5JSP0 725 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 ATP1A1-AS1Q5TC04 95 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 NUP54Q7Z3B4 507 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 MARCH3Q86UD3 253 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 OFCC1Q8IZS5 231 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 ARMC10Q8N2F6 343 aa28.03■■■□□ 2.08
CTCF-203ENST00000566078 SIRT6Q8N6T7 355 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms