RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 Q6ZT83 130 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 FCRLAQ7L513 359 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 SSX8Q7RTT4 187 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 TDRPQ86YL5 185 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 KLHL7Q8IXQ5 586 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 LILRA2Q8N149 483 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 GATSQ8NAP1 163 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 RNF128Q8TEB7 428 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 SELENOMQ8WWX9 145 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 CPNE4Q96A23 557 aaPredicted RBP6.47□□□□□ -1.37
VPS4A-203ENST00000564399 ZBTB8AQ96BR9 441 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 PHF21BQ96EK2 531 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 OSBPL9Q96SU4 736 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 SLC35C2Q9NQQ7 365 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 FARSBQ9NSD9 589 aaKnown RBP6.47□□□□□ -1.37
VPS4A-203ENST00000564399 NPAP1Q9NZP6 1156 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 ATP23Q9Y6H3 246 aa6.47□□□□□ -1.37
VPS4A-203ENST00000564399 NUP214P35658 2090 aaPredicted RBP6.46□□□□□ -1.37
VPS4A-203ENST00000564399 PKD1L1Q8TDX9 2849 aa6.46□□□□□ -1.37
VPS4A-203ENST00000564399 IGHV4-61A0A0C4DH41 118 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 A0A1W2PRB8 838 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 TCRBV9S1A1TA0A576 114 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 CIB4A0PJX0 185 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 OR5H1A6NKK0 313 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 FAM159BA6NKW6 160 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 VWC2LB2RUY7 222 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 C9JVG2 144 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 M0R1B8 84 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 NDUFS8O00217 210 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 KCNH1O95259 989 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 JUNP05412 331 aaKnown RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 CREB1P16220 341 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 PTAFRP25105 342 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 CDC25BP30305 580 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 GABRA3P34903 492 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 NR4A2P43354 598 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 OR3A2P47893 321 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 CHRNEQ04844 493 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 SLC18A2Q05940 514 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 SPOCK1Q08629 439 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 TRAF3Q13114 568 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 PLPPR5Q32ZL2 321 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 GRAMD1BQ3KR37 738 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 TMEM176BQ3YBM2 270 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF544Q6NX49 715 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 METTL2BQ6P1Q9 378 aaKnown RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 B3GLCTQ6Y288 498 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 C3orf62Q6ZUJ4 267 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 TRABD2AQ86V40 505 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 P2RY8Q86VZ1 359 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF100Q8IYN0 542 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 CENPLQ8N0S6 344 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 PTGR2Q8N8N7 351 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 ATP6V1C2Q8NEY4 427 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 OR4F6Q8NGB9 312 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 OR52N5Q8NH56 324 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 GCDHQ92947 438 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF775Q96BV0 537 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 SH3YL1Q96HL8 342 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 FOXN4Q96NZ1 517 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 NSUN5Q96P11 429 aaKnown RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 TRMOQ9BU70 441 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 SRXN1Q9BYN0 137 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 BRF2Q9HAW0 419 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 C3orf14Q9HBI5 128 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 GP6Q9HCN6 339 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 HHATLQ9HCP6 504 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 MYNNQ9NPC7 610 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 MED17Q9NVC6 651 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 DDX18Q9NVP1 670 aaKnown RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 VPS29Q9UBQ0 182 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 DMGDHQ9UI17 866 aaKnown RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 PRSS50Q9UI38 385 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 TMEFF2Q9UIK5 374 aaPredicted RBP6.46□□□□□ -1.38
VPS4A-203ENST00000564399 MCM8Q9UJA3 840 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 SNX6Q9UNH7 406 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 FKBP7Q9Y680 259 aa6.46□□□□□ -1.38
VPS4A-203ENST00000564399 A0A087WV62 115 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 IGHV3-15A0A0B4J1V0 119 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GOLGA8QA0A0J9YX86 632 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 A0A1W2PR80 420 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GXYLT2A0PJZ3 443 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 CCDC189A1A4V9 331 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 C7orf72A4D263 438 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GOLGA8OA6NCC3 632 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 CCT8L1PA6NM43 557 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GJE1A6NN92 205 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 ALG1L2C9J202 215 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GOLGA8NF8WBI6 632 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GOLGA8RI6L899 631 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 PCDH7O60245 1069 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 RAD51DO75771 328 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 VENTXO95231 258 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 C2P06681 752 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 HPGDP15428 266 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF23P17027 643 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 ENPP1P22413 925 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 IGHV1-2P23083 117 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 PSMA4P25789 261 aaKnown RBP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 CD40P25942 277 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms