RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NPY6RQ99463 290 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 RNF2Q99496 336 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 CPNE1Q99829 537 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 CHRDL1Q9BU40 450 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ERVK-6Q9BXR3 956 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MROQ9BYG7 248 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ULBP1Q9BZM6 244 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ATG10Q9H0Y0 220 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TTYH1Q9H313 450 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 EBF3Q9H4W6 596 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ACTL8Q9H568 366 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SAP30LQ9HAJ7 183 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TMEM138Q9NPI0 162 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 BABAM2Q9NXR7 383 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MAT2BQ9NZL9 334 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 KCND2Q9NZV8 630 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ZNF282Q9UDV7 671 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 ANAPC7Q9UJX3 599 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 OR52A1Q9UKL2 312 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 IKZF3Q9UKT9 509 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 RASD1Q9Y272 281 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 URGCP-MRPS24S4R325 110 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 WNK3Q9BYP7 1800 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 PRAG1Q86YV5 1406 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 PRG4Q92954 1404 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 ATP10AO60312 1499 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SPEF2Q9C093 1822 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ARHGEF10O15013 1369 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 A0A087WV48 116 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 A0A1W2PNV4 684 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 LINC00862A6NCI5 91 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 GMNCA6NCL1 334 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 A6NL46 340 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DUXAA6NLW8 204 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 A8MUI8 341 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MCIDASD6RGH6 385 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 H3BMM5 538 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 H7C2Y5 167 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 BHLHE40O14503 412 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 PSTPIP1O43586 416 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ATP2C2O75185 946 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SEC14L2O76054 403 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SLC16A8O95907 504 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 LCATP04180 440 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RLN1P04808 185 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SERPIND1P05546 499 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ERCC1P07992 297 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 ACSM4P0C7M7 580 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 UBCP0CG48 685 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 PNMTP11086 282 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ATP6V1B2P21281 511 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MST1P26927 711 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 HLA-DMAP28067 261 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 HOXD9P28356 352 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 DUSP1P28562 367 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 HNRNPH3P31942 346 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 GJC1P36383 396 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 PBX1P40424 430 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 PBX3P40426 434 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 GRIA1P42261 906 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MAGEA12P43365 314 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RFX5P48382 616 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 ACOT2P49753 483 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 STK19P49842 368 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 FGF8P55075 233 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 SLC37A1P57057 533 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 VSX2P58304 361 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 WDR5P61964 334 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 CCL7P80098 99 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 TFAMQ00059 246 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 SEMG2Q02383 582 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 FOLH1Q04609 750 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SREBF2Q12772 1141 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SERTAD2Q14140 314 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DPYSL3Q14195 570 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 GANABQ14697 944 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 VAMP3Q15836 100 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 HAGHQ16775 308 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SLC9C1Q4G0N8 1177 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RNASE10Q5GAN6 216 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 XKR7Q5GH72 579 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 KIAA1755Q5JYT7 1200 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DNLZQ5SXM8 178 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 LGSNQ5TDP6 509 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 FAM91A1Q658Y4 838 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ZNF562Q6V9R5 426 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 C3P1Q6ZMU1 363 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MRPL21Q7Z2W9 205 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 ABI3BPQ7Z7G0 1075 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 TGIF2LXQ8IUE1 241 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 EID3Q8N140 333 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 LRRC18Q8N456 261 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 OR51L1Q8NGJ5 315 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 OR51A7Q8NH64 312 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RHEBL1Q8TAI7 183 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DYNC2LI1Q8TCX1 351 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 C16orf78Q8WTQ4 265 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RNF133Q8WVZ7 376 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ACOT11Q8WXI4 607 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms