RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RPA4Q13156 261 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 HNRNPA1L2Q32P51 320 aaKnown RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 CCNJQ5T5M9 372 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 BICRALQ6AI39 1079 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 TMEM64Q6YI46 380 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ERN2Q76MJ5 926 aaKnown RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 LRRC28Q86X40 367 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 LILRB2Q8N423 598 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ZNF655Q8N720 491 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 C17orf47Q8NEP4 570 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR13C5Q8NGS8 318 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ELP4Q96EB1 424 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SLC35A4Q96G79 324 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ZNF764Q96H86 408 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 ZFP3Q96NJ6 502 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ATP13A2Q9NQ11 1180 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 PRDM7Q9NQW5 492 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 MARK1Q9P0L2 795 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 PLEKHM1Q9Y4G2 1056 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CACNG2Q9Y698 323 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SYT5O00445 386 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 EMC8O43402 210 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 SNRNP200O75643 2136 aaKnown RBP12.3□□□□□ -0.44
CLN3-210ENST00000563874 SCO1O75880 301 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 PRG2P13727 222 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CSF2RAP15509 400 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 THBS2P35442 1172 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 MTNR1BP49286 362 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 SNRPNP63162 240 aaKnown RBP12.3□□□□□ -0.44
CLN3-210ENST00000563874 ACSM1Q08AH1 577 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 DECR1Q16698 335 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 SFXN4Q6P4A7 337 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 ABHD17CQ6PCB6 329 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 FAM111BQ6SJ93 734 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 ESPNLQ6ZVH7 1005 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 MBOAT2Q6ZWT7 520 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CEACAM19Q7Z692 300 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 FBXL6Q8N531 539 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.3□□□□□ -0.44
CLN3-210ENST00000563874 OR5W2Q8NH69 310 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 PFN4Q8NHR9 129 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 TRMT10AQ8TBZ6 339 aaKnown RBP12.3□□□□□ -0.44
CLN3-210ENST00000563874 ADAMTS15Q8TE58 950 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CDS1Q92903 461 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 MS4A3Q96HJ5 214 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 OR52D1Q9H346 318 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 PRKAG2Q9UGJ0 569 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 SLC9B1P1A6NJY1 282 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 BTN3A3O00478 584 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 KLF4O43474 513 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 NARSO43776 548 aaKnown RBP12.3□□□□□ -0.44
CLN3-210ENST00000563874 RFPL3O75679 317 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 GKN3PP0CG01 181 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CLUP10909 449 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CEBPBP17676 345 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 AHCYP23526 432 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 MPIP34949 423 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 P2RY2P41231 377 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CCR6P51684 374 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 TRA2BP62995 288 aaKnown RBP12.3□□□□□ -0.44
CLN3-210ENST00000563874 KRT33BQ14525 404 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 ZBTB37Q5TC79 503 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 LYPD4Q6UWN0 246 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 OAFQ86UD1 273 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 OR4N5Q8IXE1 308 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 SLAIN1Q8ND83 568 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 COX14Q96I36 57 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 CDCP1Q9H5V8 836 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 FOLH1BQ9HBA9 442 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 C20orf141Q9NUB4 165 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 TRPM6Q9BX84 2022 aa12.3□□□□□ -0.44
CLN3-210ENST00000563874 F3P13726 295 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 GIFP27352 417 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SSTR2P30874 369 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ACSL1P33121 698 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 FXYD6P3P58550 94 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ELAVL3Q14576 367 aaKnown RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 ESCO2Q56NI9 601 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SLC48A1Q6P1K1 146 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ANGPTL6Q8NI99 470 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SFXN5Q8TD22 340 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ACOT12Q8WYK0 555 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 MRPS30Q9NP92 439 aaKnown RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 ZFP64Q9NPA5 681 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 MBNL1Q9NR56 388 aaKnown RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 MOSPD1Q9UJG1 213 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 FBXL4Q9UKA2 621 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ING4Q9UNL4 249 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 PRR23AA6NEV1 266 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 J3QLW9 94 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 J3QRE1 110 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 MAGEB4O15481 346 aaPredicted RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 PCDH8O95206 1070 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 DHFRP00374 187 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 GYPBP06028 91 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ZNF19P17023 458 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ITGB8P26012 769 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 HSD17B2P37059 387 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 GPR68Q15743 365 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 TOR2AQ5JU69 321 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms