RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FNDC5Q8NAU1 212 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 AENQ8WTP8 325 aaKnown RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 OR5P2Q8WZ92 322 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 TUBGCP3Q96CW5 907 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 ZC3HAV1LQ96H79 300 aaKnown RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 RNF145Q96MT1 663 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 SLC39A3Q9BRY0 314 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 MED18Q9BUE0 208 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 KLHL4Q9C0H6 718 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 PIGUQ9H490 435 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 TMEM185BQ9H7F4 350 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 CXorf36Q9H7Y0 433 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 ZNF395Q9H8N7 513 aaPredicted RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 MED17Q9NVC6 651 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 STOML1Q9UBI4 398 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.18□□□□□ -0.94
LDLR-214ENST00000560628 PROCRQ9UNN8 238 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 KCNE3Q9Y6H6 103 aa9.18□□□□□ -0.94
LDLR-214ENST00000560628 V9GYY5 206 aaPredicted RBP9.18□□□□□ -0.94
LDLR-214ENST00000560628 C2CD3Q4AC94 2353 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 A0A087WZY1 265 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 UQCRHLA0A096LP55 91 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 A0A0J9YW62 118 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 C16orf97H3BN30 126 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 TNFSF11O14788 317 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 SIAH2O43255 324 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 CTIFO43310 598 aaKnown RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 OIP5O43482 229 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 ITM2AO43736 263 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 LYPLA1O75608 230 aaPredicted RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 PLGP00747 810 aaPredicted RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 NGFRP08138 427 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 G6PDP11413 515 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 CD53P19397 219 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 IL11P20809 199 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 ATP6V1C1P21283 382 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 UGT2B10P36537 528 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 RPL3P39023 403 aaKnown RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 ZNF41P51814 821 aaPredicted RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 TP53BP2Q13625 1128 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PGS1Q32NB8 556 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PLPPR5Q32ZL2 321 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 LSM12Q3MHD2 195 aaKnown RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 EXOSC6Q5RKV6 272 aaKnown RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 CDC73Q6P1J9 531 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 C22orf34Q6ZV56 151 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 FAM214BQ7L5A3 538 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 HOMEZQ8IX15 550 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 GTPBP8Q8N3Z3 284 aaPredicted RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 OR10D3Q8NH80 312 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 OR5AK3PQ8NH89 298 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 B4GALNT2Q8NHY0 566 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PPP1R14CQ8TAE6 165 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 POC1BQ8TC44 478 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PHOSPHO1Q8TCT1 267 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 ACTRT2Q8TDY3 377 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 ADAMTS15Q8TE58 950 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 OSTF1Q92882 214 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 COQ8BQ96D53 544 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PIK3IP1Q96FE7 263 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PKNOX2Q96KN3 472 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PPP1R36Q96LQ0 422 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 ALPK1Q96QP1 1244 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 PRPF18Q99633 342 aaKnown RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 ACTRT3Q9BYD9 372 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 GSX1Q9H4S2 264 aaPredicted RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 ELOVL5Q9NYP7 299 aa9.17□□□□□ -0.94
LDLR-214ENST00000560628 FAF1Q9UNN5 650 aaPredicted RBP9.17□□□□□ -0.94
LDLR-214ENST00000560628 DEFB108AA8MXU0 73 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 GTPBP1O00178 669 aaKnown RBP9.16□□□□□ -0.94
LDLR-214ENST00000560628 TYROBPO43914 113 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 GOSR1O95249 250 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 SYNGR4O95473 234 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 HSPA4LO95757 839 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 NUDT14O95848 222 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CD8BP10966 210 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 FCGR2AP12318 317 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 ZNF17P17021 662 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 PRPS1L1P21108 318 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 PSMA4P25789 261 aaKnown RBP9.16□□□□□ -0.94
LDLR-214ENST00000560628 SHC1P29353 583 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 LCN1P31025 176 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CCKARP32238 428 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 SFTPDP35247 375 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 SERPINB5P36952 375 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 ETV4P43268 484 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CTBP2P56545 445 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CARD18P57730 90 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 RAC1P63000 192 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 GUSBP1Q15486 140 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CTU2Q2VPK5 515 aaKnown RBP9.16□□□□□ -0.94
LDLR-214ENST00000560628 NDUFAF6Q330K2 333 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 KLHL26Q53HC5 615 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 HBMQ6B0K9 141 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 EMBQ6PCB8 327 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CBLN3Q6UW01 205 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 MISPQ8IVT2 679 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 RIMKLAQ8IXN7 391 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 LILRA2Q8N149 483 aa9.16□□□□□ -0.94
LDLR-214ENST00000560628 CLEC4FQ8N1N0 589 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms