RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ALG2Q9H553 416 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 RUBCNLQ9H714 662 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ADA2Q9NZK5 511 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 FLRT3Q9NZU0 649 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 SLC13A4Q9UKG4 626 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 ZNF232Q9UNY5 417 aa9.2□□□□□ -0.94
USP3-216ENST00000559873 A0A087WZY1 265 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 IGLV3-32A0A0A0MS00 114 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 PRAMEF27A3QJZ7 478 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 PINLYPA6NC86 204 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 CCT8L1PA6NM43 557 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 NPIPA5E9PKD4 350 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ZNF264O43296 627 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 GMNNO75496 209 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 TRAPPC6AO75865 159 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 PGM3O95394 542 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 IFNA14P01570 189 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 NID1P14543 1247 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ADH7P40394 386 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 RFC3P40938 356 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 SLC6A8P48029 635 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 RASSF2P50749 326 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 CCR4P51679 360 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ZNF41P51814 821 aaPredicted RBP9.19□□□□□ -0.94
USP3-216ENST00000559873 GAS1P54826 345 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 MLLT10P55197 1068 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 KCNJ10P78508 379 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 LIPEQ05469 1076 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 RBPJQ06330 500 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 VEZF1Q14119 521 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 FGFBP1Q14512 234 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 SPATS1Q496A3 300 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 KLHL26Q53HC5 615 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 RPS26P11Q5JNZ5 115 aaPredicted RBP9.19□□□□□ -0.94
USP3-216ENST00000559873 COLEC12Q5KU26 742 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 SAMD4BQ5PRF9 694 aaKnown RBP9.19□□□□□ -0.94
USP3-216ENST00000559873 RNF220Q5VTB9 566 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ARHGAP11AQ6P4F7 1023 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 SLC15A3Q8IY34 581 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ZNF440Q8IYI8 595 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ARHGAP24Q8N264 748 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 GHDCQ8N2G8 530 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 TMEM251Q8N6I4 163 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 GATSQ8NAP1 163 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 OR52P1PQ8NH57 321 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 DUSP19Q8WTR2 217 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 GPR137Q96N19 417 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 KCTD14Q9BQ13 255 aaPredicted RBP9.19□□□□□ -0.94
USP3-216ENST00000559873 SLX1AQ9BQ83 275 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 TRIM8Q9BZR9 551 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 EXO5Q9H790 373 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 EVA1AQ9H8M9 152 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ZDHHC11Q9H8X9 412 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 PROK2Q9HC23 129 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ASF1BQ9NVP2 202 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 KLHL28Q9NXS3 571 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ABCD2Q9UBJ2 740 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 SEC14L3Q9UDX4 400 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 NPIPA1Q9UND3 350 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 BOD1L1Q8NFC6 3051 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ZNF462Q96JM2 2506 aa9.19□□□□□ -0.94
USP3-216ENST00000559873 ELOVL7A1L3X0 281 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 NBASA2RRP1 2371 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 B2RBV5 119 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 LINC01387J3KSC0 135 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 NME4O00746 187 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 GSTA4O15217 222 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 CDC40O60508 579 aaKnown RBP eCLIP9.18□□□□□ -0.94
USP3-216ENST00000559873 HCN1O60741 890 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ATP5HO75947 161 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 UBOX5O94941 541 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ZIC2O95409 532 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 NUDT14O95848 222 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 PRB1P04280 392 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 HPNP05981 417 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 PABPC4LP0CB38 370 aaKnown RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 RPS4Y1P22090 263 aaKnown RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 DPP4P27487 766 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 AQP1P29972 269 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 PRKAR1BP31321 381 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 MAGEA5P43359 124 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 P2RX1P51575 399 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 DSCR4P56555 118 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 CBX1P83916 185 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ZNF117Q03924 483 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 TLE1Q04724 770 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 CBFBQ13951 182 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 SLC10A1Q14973 349 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 MAPK11Q15759 364 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 CD226Q15762 336 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ADRM1Q16186 407 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 DNAL1Q4LDG9 190 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 PRR30Q53SZ7 412 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 ZNF311Q5JNZ3 666 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 MRPL2Q5T653 305 aaKnown RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 FNDC7Q5VTL7 733 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 C8orf82Q6P1X6 216 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 APOOLQ6UXV4 268 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 OLIG3Q7RTU3 272 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 IFNEQ86WN2 208 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms