RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 FOXA1P55317 472 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 SLC18A2Q05940 514 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 VEZF1Q14119 521 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 CLEC12BQ2HXU8 276 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 HEPHL1Q6MZM0 1159 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 ALKBH2Q6NS38 261 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 MFSD12Q6NUT3 480 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 SZRD1Q7Z422 152 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 GALNT10Q86SR1 603 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 LILRA2Q8N149 483 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 C17orf53Q8N3J3 647 aaPredicted RBP8.19□□□□□ -1.1
HDDC3-204ENST00000559834 NUP43Q8NFH3 380 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 B4GALNT2Q8NHY0 566 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 FAM110BQ8TC76 370 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 FBXW5Q969U6 566 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 GTPBP3Q969Y2 492 aaKnown RBP8.19□□□□□ -1.1
HDDC3-204ENST00000559834 CPNE4Q96A23 557 aaPredicted RBP8.19□□□□□ -1.1
HDDC3-204ENST00000559834 PPCDCQ96CD2 204 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF764Q96H86 408 aaPredicted RBP8.19□□□□□ -1.1
HDDC3-204ENST00000559834 RNF145Q96MT1 663 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 C12orf49Q9H741 205 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 GP6Q9HCN6 339 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 ACSS1Q9NUB1 689 aaPredicted RBP8.19□□□□□ -1.1
HDDC3-204ENST00000559834 MED17Q9NVC6 651 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 FBXO34Q9NWN3 711 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 C1orf109Q9NX04 203 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 SH3BP4Q9P0V3 963 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 NTMQ9P121 344 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 RNF115Q9Y4L5 304 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 RTTNQ86VV8 2226 aa8.19□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF469Q96JG9 3925 aaPredicted RBP8.19□□□□□ -1.1
HDDC3-204ENST00000559834 A0A1W2PQD3 144 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 H3BNH8 94 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 OVOL3O00110 214 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 CLOCKO15516 846 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 RGS14O43566 566 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 TBX19O60806 448 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 PRKD3O94806 890 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 SOX30O94993 753 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 KCNK2O95069 426 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 IFNA2P01563 188 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 PYGBP11216 843 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 PSMA4P25789 261 aaKnown RBP8.18□□□□□ -1.1
HDDC3-204ENST00000559834 ADH6P28332 368 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 GCAP28676 217 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 AGTR1P30556 359 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 CCT5P48643 541 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 PRIM2P49643 509 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 DNAJB13P59910 316 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 DMTNQ08495 405 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 CAPRIN1Q14444 709 aaKnown RBP8.18□□□□□ -1.1
HDDC3-204ENST00000559834 KIAA0040Q15053 153 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 P2RY6Q15077 328 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 PLPPR5Q32ZL2 321 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 CCDC153Q494R4 210 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 NCMAPQ5T1S8 102 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 SFRP5Q5T4F7 317 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 FIGNL1Q6PIW4 674 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 ZYG11AQ6WRX3 759 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 SSX8Q7RTT4 187 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 MTERF4Q7Z6M4 381 aaKnown RBP8.18□□□□□ -1.1
HDDC3-204ENST00000559834 SLC43A2Q8N370 569 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 CEP112Q8N8E3 955 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 GATSQ8NAP1 163 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 SMAP2Q8WU79 429 aaPredicted RBP8.18□□□□□ -1.1
HDDC3-204ENST00000559834 ROBO4Q8WZ75 1007 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 ARL8AQ96BM9 186 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 S100PBPQ96BU1 408 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 EGLN2Q96KS0 407 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 KLHL15Q96M94 604 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 MS4A4EQ96PG1 132 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 REPIN1Q9BWE0 567 aaKnown RBP8.18□□□□□ -1.1
HDDC3-204ENST00000559834 REG4Q9BYZ8 158 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 HOXD1Q9GZZ0 328 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 REEP4Q9H6H4 257 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 L2HGDHQ9H9P8 463 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 LRTM1Q9HBL6 345 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 ADAM21Q9UKJ8 722 aa8.18□□□□□ -1.1
HDDC3-204ENST00000559834 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.18□□□□□ -1.1
HDDC3-204ENST00000559834 A0A1W2PP18 115 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 RNF223E7ERA6 249 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 NPIPB8E9PQR5 432 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 G3V2L1 256 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 ZNF195O14628 629 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 RIPK2O43353 540 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 AKAP10O43572 662 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TLX2O43763 284 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 GLRA3O75311 464 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 NUDT14O95848 222 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 CHEK2O96017 543 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 YES1P07947 543 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 ATP6V1C1P21283 382 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 PRPH2P23942 346 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 ELK4P28324 431 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 ECHS1P30084 290 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 POU6F2P78424 691 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 ITGADQ13349 1161 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 TMEM176BQ3YBM2 270 aaPredicted RBP8.17□□□□□ -1.1
HDDC3-204ENST00000559834 PODNL1Q6PEZ8 512 aa8.17□□□□□ -1.1
HDDC3-204ENST00000559834 LRIG3Q6UXM1 1119 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms