RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ALOXE3Q9BYJ1 711 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 PRRG3Q9BZD7 231 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 ERVK-18Q9QC07 812 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 PRODH2Q9UF12 536 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 FBXO4Q9UKT5 387 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 TRBV4-1A0A0J9YWV2 114 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 M0R3H8 397 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 TBX1O43435 398 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 BRINP1O60477 761 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 GIMD1P0DJR0 217 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 NID1P14543 1247 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 LIMK1P53667 647 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 DSG2Q14126 1118 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 PLK5Q496M5 336 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 TMEM71Q6P5X7 295 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 KLHL17Q6TDP4 642 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 QSOX2Q6ZRP7 698 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 RRM2BQ7LG56 351 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 SLC46A3Q7Z3Q1 461 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 RAB43Q86YS6 212 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 PLCZ1Q86YW0 608 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 PARP16Q8N5Y8 322 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 SLC7A13Q8TCU3 470 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 ART5Q96L15 291 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 Q96MT0 163 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 ZNF768Q9H5H4 540 aaKnown RBP11.75□□□□□ -0.53
SHMT2-229ENST00000557348 Q9N2J8 555 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 TMEM74BQ9NUR3 256 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 RNF6Q9Y252 685 aa11.75□□□□□ -0.53
SHMT2-229ENST00000557348 VCANP13611 3396 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 SPAG17Q6Q759 2223 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 SLC35F4A4IF30 521 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ZAR1LA6NP61 321 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 DSCR3O14972 297 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 FAM20BO75063 409 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 CBX7O95931 251 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 GASTP01350 101 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 MT-ND2P03891 347 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ERP29P30040 261 aaKnown RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 TRHRP34981 398 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 SLC15A1P46059 708 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 NCS1P62166 190 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ACY1Q03154 408 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 PIN1Q13526 163 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 SHBQ15464 509 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 AMZ1Q400G9 498 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 NKAIN2Q5VXU1 208 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 PGBD2Q6P3X8 592 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 PLEKHM3Q6ZWE6 761 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ZNF767PQ75MW2 155 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 KANSL1Q7Z3B3 1105 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 CCDC190Q86UF4 302 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 VRK2Q86Y07 508 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 C1orf210Q8IVY1 113 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 CMIPQ8IY22 773 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ENTHD1Q8IYW4 607 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 OR4K5Q8NGD3 323 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 OR52R1Q8NGF1 315 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 OR4D11Q8NGI4 311 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 CNIH3Q8TBE1 160 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 SUN5Q8TC36 379 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 HTRA1Q92743 480 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 DIO2Q92813 273 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 GTPBP3Q969Y2 492 aaKnown RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ZC3H10Q96K80 434 aaKnown RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 TEX12Q9BXU0 123 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 ANKRA2Q9H9E1 313 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 FOLH1BQ9HBA9 442 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 RLIMQ9NVW2 624 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 FKBP14Q9NWM8 211 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 RHCGQ9UBD6 479 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 TESQ9UGI8 421 aaKnown RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 NDOR1Q9UHB4 597 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 RBMX2Q9Y388 322 aaKnown RBP11.74□□□□□ -0.53
SHMT2-229ENST00000557348 XIRP2A4UGR9 3374 aa11.74□□□□□ -0.53
SHMT2-229ENST00000557348 BDP1A6H8Y1 2624 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 TEX51A0A1B0GUA7 166 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 A0A1B0GX78 115 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 H3BMH7 237 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 CYP7B1O75881 506 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 CER1O95813 267 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 EPPINO95925 133 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 CT62P0C5K7 136 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 PRKCAP17252 672 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 GABRA3P34903 492 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 SOX18P35713 384 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 KRT20P35900 424 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 GCGRP47871 477 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 IDH2P48735 452 aaKnown RBP11.73□□□□□ -0.53
SHMT2-229ENST00000557348 MASP1P48740 699 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 EEF1A1P68104 462 aaKnown RBP11.73□□□□□ -0.53
SHMT2-229ENST00000557348 PSPHP78330 225 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 FUT7Q11130 342 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 TARDBPQ13148 414 aaKnown RBP eCLIP11.73□□□□□ -0.53
SHMT2-229ENST00000557348 GPR50Q13585 617 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 PTGES3Q15185 160 aaKnown RBP11.73□□□□□ -0.53
SHMT2-229ENST00000557348 DECR1Q16698 335 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 C1orf94Q6P1W5 598 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 PODNL1Q6PEZ8 512 aa11.73□□□□□ -0.53
SHMT2-229ENST00000557348 TSSK4Q6SA08 328 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms