RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CA5BP1Q8WTZ4 195 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 RAB8BQ92930 207 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 VPS33AQ96AX1 596 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 ROPN1LQ96C74 230 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 SPDL1Q96EA4 605 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF350Q9GZX5 532 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 CCDC134Q9H6E4 229 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 MRGBPQ9NV56 204 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 CCDC167Q9P0B6 97 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 STOML1Q9UBI4 398 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 WDR45Q9Y484 360 aa11.32□□□□□ -0.6
SLIRP-209ENST00000557342 USP9XQ93008 2570 aaPredicted RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 NPIPA5A0A0B4J1W7 369 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 CD8B2A6NJW9 211 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 PRSS44E7EML9 344 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 NPIPA7E9PJI5 369 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 H0Y3Z8 333 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 GTPBP1O00178 669 aaKnown RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 HMGN4O00479 90 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 NR5A2O00482 541 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 HCRTR2O43614 444 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 GMFGO60234 142 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 VIMP08670 466 aaKnown RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 NPIPA8P0DM63 369 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF17P17021 662 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 TCEA1P23193 301 aaKnown RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 TIMP3P35625 211 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 LHX2P50458 406 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 P2RX1P51575 399 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF41P51814 821 aaPredicted RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 EEFSECP57772 596 aaKnown RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 B3GALT5-AS1P59052 145 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 GUCY1A3Q02108 690 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 CD226Q15762 336 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF141Q15928 474 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ACSF3Q4G176 576 aaPredicted RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 AGKQ53H12 422 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 DCST1Q5T197 706 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 RIPPLY2Q5TAB7 128 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 AP1ARQ63HQ0 302 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 DNAJC14Q6Y2X3 702 aaPredicted RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 FUNDC1Q8IVP5 155 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF619Q8N2I2 560 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 RPRMLQ8N4K4 120 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 GTF2H4Q92759 462 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ZBTB8AQ96BR9 441 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 SH3YL1Q96HL8 342 aaPredicted RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 DOCK7Q96N67 2140 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 TRNT1Q96Q11 434 aaKnown RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 SAP130Q9H0E3 1048 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 RAD21L1Q9H4I0 556 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 CALHM2Q9HA72 323 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 TPT1P8Q9HAU6 139 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 CHST11Q9NPF2 352 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 THUMPD1Q9NXG2 353 aaKnown RBP11.31□□□□□ -0.6
SLIRP-209ENST00000557342 MKLN1Q9UL63 735 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 RNF6Q9Y252 685 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 HCFC1P51610 2035 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 HEATR5AQ86XA9 2040 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 CACNA1CQ13936 2221 aa11.31□□□□□ -0.6
SLIRP-209ENST00000557342 ASH1LQ9NR48 2969 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 A0A096LPI6 279 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 OR2M5A3KFT3 312 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 TMEM247A6NEH6 219 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 SERINC4A6NH21 518 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 HSPB2A8KAH6 182 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF264O43296 627 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 KIAA0513O60268 411 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 EIF4E2O60573 245 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 FCMRO60667 390 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF708P17019 499 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 POU3F2P20265 443 aaPredicted RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 HTR1EP28566 365 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 ADH7P40394 386 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 MDH1P40925 334 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 EIF1P41567 113 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 STARP49675 285 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 ZNF117Q03924 483 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 SRYQ05066 204 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 HSPB2Q16082 182 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 PDZK1Q5T2W1 519 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 NSUN5P2Q63ZY6 315 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 TYW3Q6IPR3 259 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 SLC2A7Q6PXP3 512 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 CHMP1BQ7LBR1 199 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 MEIOBQ8N635 442 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 TOR1AIP2Q8NFQ8 470 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 PNPT1Q8TCS8 783 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 PMM1Q92871 262 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 TRIB1Q96RU8 372 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 TMEM120AQ9BXJ8 343 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 PAIP1Q9H074 479 aaKnown RBP11.3□□□□□ -0.6
SLIRP-209ENST00000557342 FGFR1OP2Q9NVK5 253 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 CALML5Q9NZT1 146 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 P2RX2Q9UBL9 471 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 VDAC3Q9Y277 283 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 PCDHB14Q9Y5E9 798 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 AP4B1Q9Y6B7 739 aa11.3□□□□□ -0.6
SLIRP-209ENST00000557342 MED12Q93074 2177 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms