RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TWF1Q12792 350 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RBBP7Q16576 425 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 VMACQ2NL98 169 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SLC10A6Q3KNW5 377 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RFTN2Q52LD8 501 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 FBXO46Q6PJ61 603 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 PRSS55Q6UWB4 352 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF813Q6ZN06 617 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 PRICKLE2Q7Z3G6 844 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RANBP3LQ86VV4 465 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 OR2L8Q8NGY9 312 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 HUS1BQ8NHY5 278 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SMAP2Q8WU79 429 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TMEM176AQ96HP8 235 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 MGME1Q9BQP7 344 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TEX101Q9BY14 249 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 DPY30Q9C005 99 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SARS2Q9NP81 518 aaKnown RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 NLE1Q9NVX2 485 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SLC22A14Q9Y267 594 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 COL2A1P02458 1487 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 A0A0D9SG52 128 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 HSBP1L1C9JCN9 74 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TLR4O00206 839 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 HSPA12AO43301 675 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SUV39H1O43463 412 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 DIRAS3O95661 229 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RAB36O95755 333 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SERPINA5P05154 406 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ASGR1P07306 291 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 THBS1P07996 1170 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 QDPRP09417 244 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 NR2F6P10588 404 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 INSRRP14616 1297 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ITGB5P18084 799 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 CPT2P23786 658 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ACKR3P25106 362 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 GLP1RP43220 463 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 MVDP53602 400 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SLC26A5P58743 744 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TAP2Q03519 686 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 HGFACQ04756 655 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF177Q13360 481 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TIGD5Q53EQ6 642 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 NSUN5P2Q63ZY6 315 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 PIM3Q86V86 326 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 FAM131BQ86XD5 332 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 PTOV1Q86YD1 416 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 GMCL1P1Q8NEA9 526 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SLC24A4Q8NFF2 622 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 OR6J1Q8NGC5 347 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 OR52N2Q8NGI0 321 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 OR10D4PQ8NGN7 298 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ARL11Q969Q4 196 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RGMAQ96B86 450 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TPD52L3Q96J77 140 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 C1QTNF3Q9BXJ4 246 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 TAS2R5Q9NYW4 299 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RCC2Q9P258 522 aaKnown RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF70Q9UC06 446 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SH3BGRL2Q9UJC5 107 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ZDHHC8Q9ULC8 765 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 MOKQ9UQ07 419 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RAI2Q9Y5P3 530 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 SMCHD1A6NHR9 2005 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 A6NJY4 79 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SUPT3HB4E1H0 165 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 ANHXE9PGG2 379 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 PLGP00747 810 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 PIGRP01833 764 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 IL5P05113 134 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 HOXB9P17482 250 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 HLA-DPA1P20036 260 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 CHI3L1P36222 383 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 MNDAP41218 407 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SOX8P57073 446 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 RBX1P62877 108 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SKP1P63208 163 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SURF1Q15526 300 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF630Q2M218 657 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 NKAPLQ5M9Q1 402 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SFRP4Q6FHJ7 346 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SWSAP1Q6NVH7 229 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 ABHD13Q7L211 337 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 C6orf120Q7Z4R8 191 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 C1QL4Q86Z23 238 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 CILP2Q8IUL8 1156 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 VRK3Q8IV63 474 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 ARIH2OSQ8N7S6 290 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SAMD12Q8N8I0 201 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 FAM98AQ8NCA5 519 aaKnown RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 KCTD12Q96CX2 325 aaKnown RBP12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SCLYQ96I15 445 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 SLC6A18Q96N87 628 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 DUSP16Q9BY84 665 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 BCO2Q9BYV7 579 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 CLMPQ9H6B4 373 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 PPIL1Q9Y3C6 166 aa12.92□□□□□ -0.34
SHMT2-226ENST00000556825 A6NLC8 198 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms