RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 WISP3O95389 354 aaPredicted RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 INSP01308 110 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 IGHV3-48P01763 117 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 THRBP10828 461 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 ZNF44P15621 663 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 H2AFXP16104 143 aaPredicted RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 EPHX2P34913 555 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 CTRLP40313 264 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 KIR2DS2P43631 304 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 NOVA1P51513 510 aaKnown RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 APOC4P55056 127 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 RPA4Q13156 261 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 UNC119Q13432 240 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 LRRC31Q6UY01 552 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 HSD11B1LQ7Z5J1 315 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 ADAMTSL2Q86TH1 951 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 CCNYQ8ND76 341 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 ZNF740Q8NDX6 193 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 EXOC6Q8TAG9 804 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 SCRT1Q9BWW7 348 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 TBC1D10AQ9BXI6 508 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 KAT8Q9H7Z6 458 aaKnown RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 ZDHHC11Q9H8X9 412 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 SH2D2AQ9NP31 389 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 PAK1IP1Q9NWT1 392 aaPredicted RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 C1orf123Q9NWV4 160 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 ZNF225Q9UK10 706 aa2.24□□□□□ -2.05
SCFD1-216ENST00000555550 PRPF19Q9UMS4 504 aaKnown RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 EIF3LQ9Y262 564 aaKnown RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 PRG3Q9Y2Y8 225 aaPredicted RBP2.24□□□□□ -2.05
SCFD1-216ENST00000555550 TMX2-CTNND1H3BSU7 103 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 EFNA2O43921 213 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 NPIPB7O75200 414 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 ZNF324O75467 553 aaPredicted RBP2.23□□□□□ -2.05
SCFD1-216ENST00000555550 MMP1P03956 469 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 BCKDHAP12694 445 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 PTPN6P29350 595 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 HERVK_113P61574 105 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 TFDP1Q14186 410 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 PTGES3Q15185 160 aaKnown RBP2.23□□□□□ -2.05
SCFD1-216ENST00000555550 NSDHLQ15738 373 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 CDKN3Q16667 212 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 PAGE3Q5JUK9 113 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 ETFRF1Q6IPR1 90 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 FAM159AQ6UWV7 190 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 RNF165Q6ZSG1 346 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 C17orf82Q86X59 251 aaPredicted RBP2.23□□□□□ -2.05
SCFD1-216ENST00000555550 CNTN4Q8IWV2 1026 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 BATF2Q8N1L9 274 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 FAM71E2Q8N5Q1 922 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 DNAJA4Q8WW22 397 aaPredicted RBP2.23□□□□□ -2.05
SCFD1-216ENST00000555550 KRT35Q92764 455 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 ADIPOR1Q96A54 375 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 RTBDNQ9BSG5 229 aaPredicted RBP2.23□□□□□ -2.05
SCFD1-216ENST00000555550 CHRDL1Q9BU40 450 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 MID1IP1Q9NPA3 183 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 TRPV5Q9NQA5 729 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 TRIM10Q9UDY6 481 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 DCDC2Q9UHG0 476 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 CRLS1Q9UJA2 301 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 TEX264Q9Y6I9 313 aa2.23□□□□□ -2.05
SCFD1-216ENST00000555550 DHX29Q7Z478 1369 aaKnown RBP2.23□□□□□ -2.05
SCFD1-216ENST00000555550 RPGRIP1LQ68CZ1 1315 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 SYCE3A1L190 88 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 A8MUA0 341 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 K7N7A8 449 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 KINO60870 393 aaKnown RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 AKR7A3O95154 331 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 ANXA4P09525 319 aaPredicted RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 ZCCHC18P0CG32 403 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 AQP1P29972 269 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 PRDX2P32119 198 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 DLSTP36957 453 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 CSNK1DP48730 415 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 OSTNP61366 133 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 PAX5Q02548 391 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 WASHC5Q12768 1159 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 ARFRP1Q13795 201 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 C2orf76Q3KRA6 126 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 DNAJC21Q5F1R6 531 aaKnown RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 FAM120AOSQ5T036 256 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 FAM220AQ7Z4H9 259 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 ANKRD23Q86SG2 305 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 SYVN1Q86TM6 617 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 OR52I1Q8NGK6 324 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 SLC25A36Q96CQ1 311 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 SDSLQ96GA7 329 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 CCDC43Q96MW1 224 aaKnown RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 WRAP53Q9BUR4 548 aaKnown RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 CHIAQ9BZP6 476 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 POLR2J2Q9GZM3 115 aaKnown RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 COMMD4Q9H0A8 199 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 POLR2J3Q9H1A7 115 aaKnown RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 RPAP3Q9H6T3 665 aaPredicted RBP2.22□□□□□ -2.05
SCFD1-216ENST00000555550 CYP39A1Q9NYL5 469 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 BTNL2Q9UIR0 455 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 PLLPQ9Y342 182 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 SLCO1B1Q9Y6L6 691 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 HIVEP2P31629 2446 aa2.22□□□□□ -2.05
SCFD1-216ENST00000555550 THSD7BQ9C0I4 1608 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms