RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ABCF3Q9NUQ8 709 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 INTS10Q9NVR2 710 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ALKBH4Q9NXW9 302 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 BFARQ9NZS9 450 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 LPAR3Q9UBY5 353 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 NKX1-2Q9UD57 310 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 MTRF1LQ9UGC7 380 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.21□□□□□ -1.9
LIMA1-206ENST00000550611 USF3Q68DE3 2245 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF407Q9C0G0 2248 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 RYR1P21817 5038 aa3.21□□□□□ -1.9
LIMA1-206ENST00000550611 DNAJC13O75165 2243 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ABCA1O95477 2261 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ZCWPW2A0A1B0GU75 182 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TCRBV7S3A2A0A539 114 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 URADA6NGE7 173 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 A8MXE2 369 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 DEFB108AA8MXU0 73 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 MIF4GDA9UHW6 222 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 E5RI56 91 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 E7EVH7 732 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 GOLGA6L19H0YKK7 550 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 AP4M1O00189 453 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PSMD12O00232 456 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CES2O00748 559 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PFDN6O15212 129 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CTIFO43310 598 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TRIM3O75382 744 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 RCBTB2O95199 551 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ETHE1O95571 254 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 IFNB1P01574 187 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 C1QAP02745 245 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 IGKV3-11P04433 115 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 P04436 131 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 HPNP05981 417 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TPM3P06753 285 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 C8GP07360 202 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 F7P08709 466 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TMEM225BP0DP42 221 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 HSD3B1P14060 373 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CPN1P15169 458 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 HNF4AP41235 474 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 MAGEA6P43360 314 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 GSTM5P46439 218 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 SLCO1A2P46721 670 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PRKAA2P54646 552 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TPTEP56180 551 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 RAB38P57729 211 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 SKP1P63208 163 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 BTN3A2P78410 334 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 IGLV3-21P80748 117 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CCZ1BP86790 482 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CCZ1P86791 482 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CDK16Q00536 496 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 REEP5Q00765 189 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 RGS1Q08116 209 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TBL3Q12788 808 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CSHL1Q14406 222 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 SIX1Q15475 284 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PHKG1Q16816 387 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ADPRMQ3LIE5 342 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 FAM174BQ3ZCQ3 159 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 SLC22A10Q63ZE4 541 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 DUPD1Q68J44 220 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 HEPHL1Q6MZM0 1159 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CAVIN1Q6NZI2 390 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 MBOAT1Q6ZNC8 495 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 FAM47EQ6ZV65 393 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 DENND6AQ8IWF6 608 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CPNE9Q8IYJ1 553 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 METTL25Q8N6Q8 603 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TRPV3Q8NET8 790 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 OR5L2Q8NGL0 311 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 NUBPLQ8TB37 319 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ZPLD1Q8TCW7 415 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF721Q8TF20 911 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TMEM255BQ8WV15 326 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 EEF1AKMT1Q8WVE0 214 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ROBO4Q8WZ75 1007 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 DAZLQ92904 295 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 NEIL2Q969S2 332 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ANKRD9Q96BM1 317 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PYCR2Q96C36 320 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 FBXL8Q96CD0 374 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 MS4A6EQ96DS6 147 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PERPQ96FX8 193 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 WDYHV1Q96HA8 205 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 SENP5Q96HI0 755 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 HES6Q96HZ4 224 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 GPR21Q99679 349 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CCDC77Q9BR77 488 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 RBM24Q9BX46 236 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 FAM234AQ9H0X4 552 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 RHBGQ9H310 441 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 UBQLN3Q9H347 655 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PELI2Q9HAT8 420 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 FBXO6Q9NRD1 293 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PRTFDC1Q9NRG1 225 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF701Q9NV72 531 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CNIH4Q9P003 139 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms