RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LGI4Q8N135 537 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ARIH2OSQ8N7S6 290 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 FAM98AQ8NCA5 519 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 OR5M9Q8NGP3 310 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OR4L1Q8NH43 312 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SLC5A11Q8WWX8 675 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SELENOMQ8WWX9 145 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 GEMIN6Q8WXD5 167 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 PHYHIPLQ96FC7 376 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SLC38A3Q99624 504 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NLNQ9BYT8 704 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PCED1AQ9H1Q7 454 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TMEM38AQ9H6F2 299 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 RNF122Q9H9V4 155 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 DECR2Q9NUI1 292 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 RBM22Q9NW64 420 aaKnown RBP eCLIP4.93□□□□□ -1.62
USP28-213ENST00000544967 ZSCAN32Q9NX65 697 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 C5AR2Q9P296 337 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 THAP10Q9P2Z0 257 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 MRPS7Q9Y2R9 242 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 MAP4K5Q9Y4K4 846 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PCDHB11Q9Y5F2 797 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 A0A0U1RQK1 487 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZNF320A2RRD8 509 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TMEM229AB2RXF0 380 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TLR4O00206 839 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 EIF1BO60739 113 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 PAGE1O75459 146 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZNF821O75541 412 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 CD160O95971 181 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TCRBP04435 133 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 HIST1H2AGP0C0S8 130 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 CLEC2LP0C7M8 214 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 HIST1H2ADP20671 130 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 EIF1P41567 113 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 XCR1P46094 333 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MMP15P51511 669 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PTPN5P54829 565 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 IL2P60568 153 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RPL38P63173 70 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 TAP2Q03519 686 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 IL18Q14116 193 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MPPED2Q15777 294 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SNAPC1Q16533 368 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CDNFQ49AH0 187 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CRB2Q5IJ48 1285 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 HIST2H2AA3Q6FI13 130 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 KIAA1161Q6NSJ0 714 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SYT13Q7L8C5 426 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TSEN54Q7Z6J9 526 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 MRGPREQ86SM8 312 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PDZD3Q86UT5 571 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TPRA1Q86W33 373 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RTL3Q8N8U3 475 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 DCAF4L2Q8NA75 395 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 KAT2AQ92830 837 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 FGF11Q92914 225 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TCEAL3Q969E4 200 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MRPS24Q96EL2 167 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 HIST1H2AJQ99878 128 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 NKX6-2Q9C056 277 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 SAV1Q9H4B6 383 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 XKR8Q9H6D3 395 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 WDCPQ9H6R7 721 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MARCH4Q9P2E8 410 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 GALPQ9UBC7 116 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 EXTL2Q9UBQ6 330 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZNF222Q9UK12 451 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ACSL6Q9UKU0 697 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PLCL2Q9UPR0 1127 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 OARD1Q9Y530 152 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PCDHB1Q9Y5F3 818 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PCDHGA9Q9Y5G4 932 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 LOC102723532A0A0G2JNH3 316 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 H3BM21 787 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SMLR1H3BR10 107 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CLIC1O00299 241 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RFXANKO14593 260 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TO15178 435 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 GALR3O60755 368 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 ENTPD6O75354 484 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RP2O75695 350 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 AP2A2O94973 939 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CFDP00746 253 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 FABP1P07148 127 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 BCKDHAP12694 445 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PKMP14618 531 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 WNT5AP41221 380 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TTPAP49638 278 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ARSDP51689 593 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SCAND1P57086 179 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 EFEMP1Q12805 493 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZNF155Q12901 538 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 NTRK2Q16620 822 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ANXA8L1Q5VT79 327 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TMEM215Q68D42 235 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 HBMQ6B0K9 141 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SLC25A24Q6NUK1 477 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 FBXL22Q6P050 247 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PAQR3Q6TCH7 311 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms