RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 EPHA6Q9UF33 1036 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 GSTK1Q9Y2Q3 226 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 TRDV1A0A1B0GX56 115 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SLC30A4O14863 429 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SCO2O43819 266 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CDH11P55287 796 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SMAD4Q13485 552 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 ELOCQ15369 112 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 QSOX2Q6ZRP7 698 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 NKAIN4Q8IVV8 208 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SLC38A6Q8IZM9 456 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 LNX2Q8N448 690 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 IQCF1Q8N6M8 205 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 FAM181AQ8N9Y4 354 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ZDHHC1Q8WTX9 485 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CD180Q99467 661 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 C6orf62Q9GZU0 229 aaPredicted RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 QRSL1Q9H0R6 528 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 TMEM27Q9HBJ8 222 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SMURF1Q9HCE7 757 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 TAS2R16Q9NYV7 291 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 POLHQ9Y253 713 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TP53BP1Q12888 1972 aaPredicted RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 ZNF749O43361 778 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CHP2O43745 196 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 AKAP8O43823 692 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 CTNSO60931 367 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 NSA2O95478 260 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 THY1P04216 161 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TSPAN19P0C672 248 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SRFP11831 508 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 LCN1P31025 176 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 EPHA4P54764 986 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TPTEP56180 551 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SHC2P98077 582 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 OR1Q1Q15612 314 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TRAM1Q15629 374 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ZNF141Q15928 474 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CCDC58Q4VC31 144 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TRMT12Q53H54 448 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 MRPL2Q5T653 305 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 ZNF550Q7Z398 422 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 C17orf82Q86X59 251 aaPredicted RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 GKN2Q86XP6 184 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 NRMQ8IXM6 262 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ZNF440Q8IYI8 595 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SIX5Q8N196 739 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 VWA5B2Q8N398 1253 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 KLHL36Q8N4N3 616 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 PARP16Q8N5Y8 322 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 LSMEM1Q8N8F7 131 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 OR4Q3Q8NH05 313 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 HMGB4Q8WW32 186 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TMEM239Q8WW34 195 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 COL26A1Q96A83 441 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SLC25A46Q96AG3 418 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ZG16BQ96DA0 208 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TOE1Q96GM8 510 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 SLC30A2Q9BRI3 323 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ORAI3Q9BRQ5 295 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ZNF426Q9BUY5 554 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 EGLN3Q9H6Z9 239 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 ADAP2Q9NPF8 381 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CD93Q9NPY3 652 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CLEC2DQ9UHP7 191 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 SLC7A7Q9UM01 511 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 CAB39Q9Y376 341 aaPredicted RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 SF3B6Q9Y3B4 125 aaKnown RBP9.16□□□□□ -0.94
SS18-205ENST00000542420 MTCH2Q9Y6C9 303 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 TRANK1O15050 2925 aa9.16□□□□□ -0.94
SS18-205ENST00000542420 FAM86C2PA6NEL3 165 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 CENPBD1B2RD01 187 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 J3QRE1 110 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 HCN1O60741 890 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 CBX7O95931 251 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 BMP7P18075 431 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 ETV5P41161 510 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 SLC9A3P48764 834 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 ETV1P50549 477 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 CTAG1AP78358 180 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 AMZ1Q400G9 498 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 TCTE1Q5JU00 501 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 CADM4Q8NFZ8 388 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 TMCO6Q96DC7 493 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 CEP19Q96LK0 163 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 KCTD7Q96MP8 289 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 NELL2Q99435 816 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 G6PC3Q9BUM1 346 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 TP63Q9H3D4 680 aaPredicted RBP9.15□□□□□ -0.94
SS18-205ENST00000542420 HAO2Q9NYQ3 351 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 H2AFY2Q9P0M6 372 aaPredicted RBP9.15□□□□□ -0.94
SS18-205ENST00000542420 MRPS2Q9Y399 296 aaKnown RBP9.15□□□□□ -0.94
SS18-205ENST00000542420 MED31Q9Y3C7 131 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 PCDHGB6Q9Y5F9 930 aa9.15□□□□□ -0.94
SS18-205ENST00000542420 FITM1A5D6W6 292 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 H0YIG0 161 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 CLDN4O14493 209 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 SCAMP1O15126 338 aa9.15□□□□□ -0.95
SS18-205ENST00000542420 PRAMEF2O60811 474 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms