RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 KCNK2O95069 426 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 KCNH1O95259 989 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 DANCRP0C864 163 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 NPIPA8P0DM63 369 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 PRPS2P11908 318 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 PPP3CBP16298 524 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 PSMB1P20618 241 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 SFTPDP35247 375 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 PRKAG1P54619 331 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 FOXF1Q12946 379 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 VEZF1Q14119 521 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 CLEC12BQ2HXU8 276 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 EXOSC6Q5RKV6 272 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 HBMQ6B0K9 141 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 TFAP2EQ6VUC0 442 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 FRMD7Q6ZUT3 714 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 SLC22A9Q8IVM8 553 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 WDR75Q8IWA0 830 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 GABRG1Q8N1C3 465 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 KBTBD8Q8NFY9 601 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 FAM110BQ8TC76 370 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 C16orf45Q96MC5 204 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 CXorf56Q9H5V9 222 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 MCTS1Q9ULC4 181 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 NFU1Q9UMS0 254 aa13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 MAGED1Q9Y5V3 778 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-213ENST00000541953 UQCRHLA0A096LP55 91 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 C7orf72A4D263 438 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 RIPK2O43353 540 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 ABHD2P08910 425 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 LINGO3P0C6S8 592 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 SDC1P18827 310 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 ACVR1BP36896 505 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 CLK3P49761 638 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 RAC1P63000 192 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 TAB1Q15750 504 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 TOMM34Q15785 309 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 ZNF239Q16600 458 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 NDUFAF6Q330K2 333 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 CBLN3Q6UW01 205 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 ZYG11AQ6WRX3 759 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 BEND4Q6ZU67 534 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 ESPNLQ6ZVH7 1005 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 SZRD1Q7Z422 152 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 TUSC5Q8IXB3 177 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 NUP43Q8NFH3 380 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 SPATA3Q8NHX4 192 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 RNF128Q8TEB7 428 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 KLHL15Q96M94 604 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 TSSK3Q96PN8 268 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 COQ10BQ9H8M1 238 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 TBK1Q9UHD2 729 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 BAIAP2L1Q9UHR4 511 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 MRTO4Q9UKD2 239 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 STK38LQ9Y2H1 464 aa13.76□□□□□ -0.21
CLSTN3-213ENST00000541953 A0A087WZY1 265 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 IGHV3-15A0A0B4J1V0 119 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 CLOCKO15516 846 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 SYNGR4O95473 234 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 IGHV4-39P01824 125 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 PROCP04070 461 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 TUBBP07437 444 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 THBS1P07996 1170 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 NGFRP08138 427 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 IFI6P09912 130 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 FAM153BP0C7A2 387 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 GPC1P35052 558 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 FRKP42685 505 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 PSMD4P55036 377 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 RPS4XP62701 263 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 ZNF117Q03924 483 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 WHAMMP3Q1A5X7 153 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 PGGHGQ32M88 737 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 FAM153CQ494X1 144 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 NCMAPQ5T1S8 102 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 CPTPQ5TA50 214 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 Q6ZSR9 355 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 IKBIPQ70UQ0 350 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 LILRA2Q8N149 483 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 FAM76AQ8TAV0 307 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 OSTF1Q92882 214 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 ZBTB8AQ96BR9 441 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 FCRL1Q96LA6 429 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 TUBB1Q9H4B7 451 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 SIRT3Q9NTG7 399 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 NTMQ9P121 344 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 GDF2Q9UK05 429 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 ING1Q9UK53 422 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 GPR52Q9Y2T5 361 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 RNF115Q9Y4L5 304 aa13.75□□□□□ -0.21
CLSTN3-213ENST00000541953 SEC22BO75396 215 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 PTNP21246 168 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 DMTNQ08495 405 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 PDE7AQ13946 482 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 ADAM5Q6NVV9 412 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 DNM1P46Q6ZS02 220 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 LCA5Q86VQ0 697 aa13.74□□□□□ -0.21
CLSTN3-213ENST00000541953 CDRT4Q8N9R6 151 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms