RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 SCML1Q9UN30 329 aa11.72□□□□□ -0.53
SFSWAP-208ENST00000539506 CDH10Q9Y6N8 788 aa11.72□□□□□ -0.53
SFSWAP-208ENST00000539506 MDC1Q14676 2089 aaKnown RBP11.72□□□□□ -0.53
SFSWAP-208ENST00000539506 CACNB4O00305 520 aaPredicted RBP11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 FCMRO60667 390 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 DNAJB6O75190 326 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 THY1P04216 161 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 POU2F2P09086 479 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 UBL4AP11441 157 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 GIFP27352 417 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ACVR1BP36896 505 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 MC3RP41968 323 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 KLHL12Q53G59 568 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 PSRC1Q6PGN9 363 aaPredicted RBP11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ARL9Q6T311 187 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 QSOX2Q6ZRP7 698 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 AP3S1Q92572 193 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 RIT1Q92963 219 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ORAI3Q9BRQ5 295 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC38A1Q9H2H9 487 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 CCDC86Q9H6F5 360 aaKnown RBP11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 KLHL21Q9UJP4 597 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 CHP2O43745 196 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 PIP5K1CO60331 668 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 OR7A10O76100 309 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 FAM157BP0CG42 384 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 SLC1A3P43003 542 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 PPP3R1P63098 170 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 C19orf57Q0VDD7 668 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 TNK1Q13470 666 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 CDONQ4KMG0 1287 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ENTPD8Q5MY95 495 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 RRM2BQ7LG56 351 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 LRRC17Q8N6Y2 441 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ZNF784Q8NCA9 323 aaPredicted RBP11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 PRRC1Q96M27 445 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ZNF681Q96N22 645 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 OR7D2Q96RA2 312 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ABHD1Q96SE0 405 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 SEMA4GQ9NTN9 838 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 TMEM74BQ9NUR3 256 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 ZSCAN32Q9NX65 697 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 KCNN3Q9UGI6 736 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 FLVCR2Q9UPI3 526 aa11.71□□□□□ -0.53
SFSWAP-208ENST00000539506 SCN3AQ9NY46 2000 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 PRUNE2Q8WUY3 3088 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 FAM170BA6NMN3 283 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 SIGLEC5O15389 551 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 SLC22A5O76082 557 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 PROS1P07225 676 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 CA3P07451 260 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 TRAPPC2P0DI81 140 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 TRAPPC2BP0DI82 140 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 MAT2AP31153 395 aaKnown RBP11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 KHKP50053 298 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 SIGLEC14Q08ET2 396 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 AGERQ15109 404 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 SLC48A1Q6P1K1 146 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 FAM92BQ6ZTR7 304 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 KANSL1Q7Z3B3 1105 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 FAM181AQ8N9Y4 354 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 KCT2Q8NC54 265 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 TEX47Q8TBZ9 253 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 TMEM163Q8TC26 289 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 RPP25Q9BUL9 199 aaKnown RBP11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 NLGN3Q9NZ94 848 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 POLHQ9Y253 713 aa11.71□□□□□ -0.54
SFSWAP-208ENST00000539506 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 PROM1O43490 865 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 GATBO75879 557 aaKnown RBP11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 MT-ND4P03905 459 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 F3P13726 295 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 PPP2R1BP30154 601 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 NTSP30990 170 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 SEC13P55735 322 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 TAS2R41P59536 307 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 NTRK2Q16620 822 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 TMEM35AQ53FP2 167 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 SLC25A30Q5SVS4 291 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 RNLSQ5VYX0 342 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 SFRP4Q6FHJ7 346 aaPredicted RBP11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 TMEM64Q6YI46 380 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 NKAIN4Q8IVV8 208 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 HERVK_113Q902F9 699 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 GIMAP5Q96F15 307 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 WDR89Q96FK6 387 aaPredicted RBP11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 MARVELD1Q9BSK0 173 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 RASD1Q9Y272 281 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 E9PI62 339 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 H3BSH0 61 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 IGFALSP35858 605 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 PER3P56645 1201 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 SMIM11AP58511 58 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 COX10Q12887 443 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 ENPP2Q13822 863 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 RPE65Q16518 533 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 ZBTB37Q5TC79 503 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 TEX261Q6UWH6 196 aa11.7□□□□□ -0.54
SFSWAP-208ENST00000539506 LYPD4Q6UWN0 246 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms