RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 C17orf53Q8N3J3 647 aaPredicted RBP12.1□□□□□ -0.47
SS18-204ENST00000539244 OR6Y1Q8NGX8 325 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 CEP70Q8NHQ1 597 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 RAB3IL1Q8TBN0 382 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 POC1BQ8TC44 478 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 RNF128Q8TEB7 428 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 IFT81Q8WYA0 676 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 ANP32BQ92688 251 aaKnown RBP12.1□□□□□ -0.47
SS18-204ENST00000539244 CCDC126Q96EE4 140 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 EGLN2Q96KS0 407 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 RNF145Q96MT1 663 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 GP6Q9HCN6 339 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 EQTNQ9NQ60 294 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 RNF115Q9Y4L5 304 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 CCL27Q9Y4X3 112 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 SNX8Q9Y5X2 465 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 CADP27708 2225 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 STAB1Q9NY15 2570 aa12.1□□□□□ -0.47
SS18-204ENST00000539244 G3V2L1 256 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 PDPK1O15530 556 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 KCNK2O95069 426 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 SOD3P08294 240 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 LINGO3P0C6S8 592 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ACP2P11117 423 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ME2P23368 584 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ELK4P28324 431 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 IDUAP35475 653 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ZNF41P51814 821 aaPredicted RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 HSPB3Q12988 150 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 VEZF1Q14119 521 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 RNPS1Q15287 305 aaKnown RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 ZNF239Q16600 458 aaKnown RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 WHAMMP3Q1A5X7 153 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 NCMAPQ5T1S8 102 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ZCCHC12Q6PEW1 402 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 TFAP2EQ6VUC0 442 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 DNM1P46Q6ZS02 220 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 FRMD7Q6ZUT3 714 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ZAR1Q86SH2 424 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 OSTF1Q92882 214 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 FBXW5Q969U6 566 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 CPNE4Q96A23 557 aaPredicted RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 S100PBPQ96BU1 408 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 ZBED6CLQ96FA7 236 aaPredicted RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 TRMT61AQ96FX7 289 aaKnown RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 FCRL1Q96LA6 429 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 KLHL15Q96M94 604 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 MS4A4EQ96PG1 132 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 TACO1Q9BSH4 297 aaKnown RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 REPIN1Q9BWE0 567 aaKnown RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 IQCGQ9H095 443 aaKnown RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 C12orf49Q9H741 205 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 LRTM1Q9HBL6 345 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 NGBQ9NPG2 151 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 RRAGDQ9NQL2 400 aaPredicted RBP12.09□□□□□ -0.47
SS18-204ENST00000539244 UBQLN4Q9NRR5 601 aa12.09□□□□□ -0.47
SS18-204ENST00000539244 RNF223E7ERA6 249 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 TLX2O43763 284 aaPredicted RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 HSPA4LO95757 839 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 OPN1LWP04000 364 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 ADH6P28332 368 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 GPC1P35052 558 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 EIF1P41567 113 aaKnown RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 CARD18P57730 90 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 PDE7AQ13946 482 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 DUSP5Q16690 384 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 TMEM201Q5SNT2 666 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 SFRP5Q5T4F7 317 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 FIGNL1Q6PIW4 674 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 SEZ6L2Q6UXD5 910 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 ZYG11AQ6WRX3 759 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 LILRA2Q8N149 483 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 CCNYL1Q8N7R7 359 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 GATSQ8NAP1 163 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 NOA1Q8NC60 698 aaKnown RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 SLC16A11Q8NCK7 471 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 NUP43Q8NFH3 380 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 ZFP28Q8NHY6 868 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 MZB1Q8WU39 189 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 ABHD3Q8WU67 409 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 HSD17B8Q92506 261 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 CIDECQ96AQ7 238 aaPredicted RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 USB1Q9BQ65 265 aaKnown RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 KLHDC3Q9BQ90 382 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 REG4Q9BYZ8 158 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 GRIP2Q9C0E4 1043 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 ESRP2Q9H6T0 727 aaKnown RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 TMEM185BQ9H7F4 350 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 TNFRSF12AQ9NP84 129 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 ACSS1Q9NUB1 689 aaPredicted RBP12.08□□□□□ -0.48
SS18-204ENST00000539244 FBXO34Q9NWN3 711 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 KLHL13Q9P2N7 655 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 DCDC2Q9UHG0 476 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 EMCNQ9ULC0 261 aa12.08□□□□□ -0.48
SS18-204ENST00000539244 GOLGA8RI6L899 631 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 SEC22BO75396 215 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 CD3EP07766 207 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 UROSP10746 265 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 PYGBP11216 843 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 SHC1P29353 583 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms