RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SLC10A1Q14973 349 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 DCST2Q5T1A1 773 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 C1orf185Q5T7R7 199 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 BICRALQ6AI39 1079 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 TNFAIP8L2Q6P589 184 aaPredicted RBP9.23□□□□□ -0.93
VPS28-204ENST00000526054 C16orf62Q7Z3J2 963 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 PIGWQ7Z7B1 504 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 RNF130Q86XS8 419 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 ANKS4BQ8N8V4 417 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 FAM110BQ8TC76 370 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 ZFP90Q8TF47 636 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 TMEM41AQ96HV5 264 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 SERHL2Q9H4I8 314 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 TPT1P8Q9HAU6 139 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 HHATLQ9HCP6 504 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 ZFP64Q9NPA5 681 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 SDHAF3Q9NRP4 125 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.23□□□□□ -0.93
VPS28-204ENST00000526054 Q9UFV3 132 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 NDUFAF1Q9Y375 327 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 WIF1Q9Y5W5 379 aa9.23□□□□□ -0.93
VPS28-204ENST00000526054 FREM3P0C091 2139 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 LRRC3CA6NJW4 275 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 BBIP1A8MTZ0 92 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 FAM47E-STBD1D6RA91 191 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SCDO00767 359 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SNPHO15079 494 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SCO2O43819 266 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 HCN1O60741 890 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 TRIM3O75382 744 aaPredicted RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 IGKV1D-16P01601 117 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 NGFRP08138 427 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 OR12D1P0DN82 309 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 GABRA1P14867 456 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 HPGDP15428 266 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 ENDOUP21128 410 aaKnown RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 ADH7P40394 386 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 CASP9P55211 416 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 KLF10Q13118 480 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SLC25A35Q3KQZ1 300 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 GRAMD1BQ3KR37 738 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 GTDC1Q4AE62 458 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 LRIF1Q5T3J3 769 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 CCNJQ5T5M9 372 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 DESI1Q6ICB0 168 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 RTL6Q6ICC9 239 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 DHDDSQ86SQ9 333 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 ZNF527Q8NB42 609 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 CCDC197Q8NCU1 140 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 CHDHQ8NE62 594 aaPredicted RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 OR1J4Q8NGS1 313 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 PNPT1Q8TCS8 783 aaKnown RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 RNF138Q8WVD3 245 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 XAGE5Q8WWM1 108 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 NRGNQ92686 78 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 TBL1XR1Q9BZK7 514 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 NMUR2Q9GZQ4 415 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 HOXD1Q9GZZ0 328 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 PAIP1Q9H074 479 aaKnown RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 PROK2Q9HC23 129 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 GALNT9Q9HCQ5 603 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SLC52A3Q9NQ40 469 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SLC6A13Q9NSD5 602 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 THUMPD1Q9NXG2 353 aaKnown RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 QPCTLQ9NXS2 382 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 ALKBH4Q9NXW9 302 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 PPP4R1LQ9P1A2 415 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 SPRR3Q9UBC9 169 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.22□□□□□ -0.93
VPS28-204ENST00000526054 CORO2BQ9UQ03 480 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 ARL2BPQ9Y2Y0 163 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 L3MBTL1Q9Y468 752 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 PCDHB14Q9Y5E9 798 aa9.22□□□□□ -0.93
VPS28-204ENST00000526054 NAV3Q8IVL0 2385 aa9.21□□□□□ -0.93
VPS28-204ENST00000526054 TMEM247A6NEH6 219 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 CLIC1O00299 241 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 GNB5O14775 395 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 FADS1O60427 444 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 STX11O75558 287 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 OXSR1O95747 527 aaPredicted RBP9.21□□□□□ -0.94
VPS28-204ENST00000526054 RFPL3SP0C7P2 107 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 GDF1P27539 372 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 PTPN6P29350 595 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 DNAJA1P31689 397 aaKnown RBP9.21□□□□□ -0.94
VPS28-204ENST00000526054 PTGDSP41222 190 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 CRATP43155 626 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 FADDQ13158 208 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 NFYCQ13952 458 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 ARHGAP11BQ3KRB8 267 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 MMEL1Q495T6 779 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 FLYWCH1Q4VC44 716 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 COQ5Q5HYK3 327 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 PAGE3Q5JUK9 113 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.21□□□□□ -0.94
VPS28-204ENST00000526054 RIPPLY2Q5TAB7 128 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 TIGD3Q6B0B8 471 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 HEPHL1Q6MZM0 1159 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 GALNT10Q86SR1 603 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 LIX1LQ8IVB5 337 aa9.21□□□□□ -0.94
VPS28-204ENST00000526054 ZZZ3Q8IYH5 903 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms