RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	ZSWIM7	Q19AV6	140 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	RABL3	Q5HYI8	236 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	ERICH5	Q6P6B1	374 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	TRPM8	Q7Z2W7	1104 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	PEX5L	Q8IYB4	626 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	ST6GALNAC3	Q8NDV1	305 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	HIPK4	Q8NE63	616 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	TOR1AIP2	Q8NFQ8	470 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	OR2M3	Q8NG83	312 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	OR10A6	Q8NH74	314 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	DUSP19	Q8WTR2	217 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	MAL2	Q969L2	176 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	REXO5	Q96IC2	774 aa	Known RBP	18.91	■□□□□ 0.62
CD44-222	ENST00000526025	GNRHR2	Q96P88	292 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	ECSIT	Q9BQ95	431 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	TRIM8	Q9BZR9	551 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	SLC35A3	Q9Y2D2	325 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	POLE	Q07864	2286 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	EIF4E2	O60573	245 aa	Known RBP	18.9	■□□□□ 0.62
CD44-222	ENST00000526025	PGM3	O95394	542 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	THBS1	P07996	1170 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	GDF1	P27539	372 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	SRD5A2	P31213	254 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	MAGEA5	P43359	124 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	CD226	Q15762	336 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	MAPK14	Q16539	360 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	EIF3M	Q7L2H7	374 aa	Known RBP	18.9	■□□□□ 0.62
CD44-222	ENST00000526025	OLIG3	Q7RTU3	272 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	ZZZ3	Q8IYH5	903 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	GALNT11	Q8NCW6	608 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	FAM71C	Q8NEG0	241 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	OR4K17	Q8NGC6	315 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	NFKBID	Q8NI38	313 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	OR2B2	Q9GZK3	357 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	PTGES2	Q9H7Z7	377 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	18.9	■□□□□ 0.62
CD44-222	ENST00000526025	ABCD2	Q9UBJ2	740 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	PRDM4	Q9UKN5	801 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	ANGPT4	Q9Y264	503 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	L3MBTL1	Q9Y468	752 aa		18.9	■□□□□ 0.62
CD44-222	ENST00000526025	C2orf72	A6NCS6	295 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	FAM220BP	B1ANY3	271 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	NPIPA5	E9PKD4	350 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	HCN1	O60741	890 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	DNAJA2	O60884	412 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	ESRRA	P11474	423 aa	Predicted RBP	18.89	■□□□□ 0.61
CD44-222	ENST00000526025	CALB2	P22676	271 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	PCGF2	P35227	344 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	DSCR4	P56555	118 aa	Predicted RBP	18.89	■□□□□ 0.61
CD44-222	ENST00000526025	PCBP3	P57721	371 aa	Known RBP	18.89	■□□□□ 0.61
CD44-222	ENST00000526025	VEZF1	Q14119	521 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	SLC10A1	Q14973	349 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	KRT73	Q86Y46	540 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	SLC15A3	Q8IY34	581 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	GHDC	Q8N2G8	530 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	PHOSPHO1	Q8TCT1	267 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	ZG16B	Q96DA0	208 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	NSL1	Q96IY1	281 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF583	Q96ND8	569 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	CACYBP	Q9HB71	228 aa	Known RBP	18.89	■□□□□ 0.61
CD44-222	ENST00000526025	EXOSC3	Q9NQT5	275 aa	Known RBP	18.89	■□□□□ 0.61
CD44-222	ENST00000526025	SEC14L3	Q9UDX4	400 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	FBXL2	Q9UKC9	423 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	NPIPA1	Q9UND3	350 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	IFT52	Q9Y366	437 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	HRH3	Q9Y5N1	445 aa		18.89	■□□□□ 0.61
CD44-222	ENST00000526025	CENPVL1	A0A0U1RR11	272 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025		A0A1B0GVC2	190 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025		B4DXG7	233 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF264	O43296	627 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	SUSD5	O60279	629 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	CBX6	O95503	412 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	UBL4A	P11441	157 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	NID1	P14543	1247 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	PSME3	P61289	254 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	KCNJ10	P78508	379 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	FOXK1	P85037	733 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	VMAC	Q2NL98	169 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	GLYR1	Q49A26	553 aa	Predicted RBP	18.88	■□□□□ 0.61
CD44-222	ENST00000526025	LIN52	Q52LA3	116 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	INTS11	Q5TA45	600 aa	Known RBP	18.88	■□□□□ 0.61
CD44-222	ENST00000526025	RNF220	Q5VTB9	566 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	PGAM4	Q8N0Y7	254 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF614	Q8N883	585 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	B4GALNT2	Q8NHY0	566 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	WDR60	Q8WVS4	1066 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	ARSG	Q96EG1	525 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	SPATA5L1	Q9BVQ7	753 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	LAT2	Q9GZY6	243 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	DSN1	Q9H410	356 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	SPAG4	Q9NPE6	437 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	CMTM6	Q9NX76	183 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	ICAM5	Q9UMF0	924 aa		18.88	■□□□□ 0.61
CD44-222	ENST00000526025	GPC6	Q9Y625	555 aa	Predicted RBP	18.88	■□□□□ 0.61
CD44-222	ENST00000526025		A0A087WZY1	265 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	PDE9A	O76083	593 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	CSTA	P01040	98 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	IL7R	P16871	459 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	PGM1	P36871	562 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	CPA2	P48052	419 aa		18.87	■□□□□ 0.61

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms