RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 A0A1W2PPR1 153 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 ZNF840PA6NDX5 716 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 PTBP1P26599 531 aaKnown RBP eCLIP5.82□□□□□ -1.48
NUP54-215ENST00000514313 AP3M2P53677 418 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 PUDPQ08623 228 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 ZNF154Q13106 437 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 DPYSL3Q14195 570 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 MXD4Q14582 209 aaPredicted RBP5.82□□□□□ -1.48
NUP54-215ENST00000514313 PPP1R3AQ16821 1122 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 MICAQ29983 383 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 CCDC183Q5T5S1 534 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 GFI1BQ5VTD9 330 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 MEDAGQ5VYS4 303 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 CCBE1Q6UXH8 406 aaPredicted RBP5.82□□□□□ -1.48
NUP54-215ENST00000514313 Q6ZPB1 254 aaPredicted RBP5.82□□□□□ -1.48
NUP54-215ENST00000514313 OR4D5Q8NGN0 318 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 OR1F12Q8NHA8 337 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 COQ2Q96H96 371 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 EHFQ9NZC4 300 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 SLC2A6Q9UGQ3 507 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 TRAV26-1A0A087WT03 109 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 AP3B1O00203 1094 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 MSH4O15457 936 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 B4GALT2O60909 372 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 CAPN1P07384 714 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 HOXD4P09016 255 aaPredicted RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 CDH5P33151 784 aaPredicted RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 GRIA1P42261 906 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 ALDH3B2P48448 385 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 LIM2P55344 173 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 RND3P61587 244 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 MS4A2Q01362 244 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 ST3GAL3Q11203 375 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 COX10Q12887 443 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 TIGITQ495A1 244 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 APTXQ7Z2E3 356 aaKnown RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 EFL1Q7Z2Z2 1120 aaKnown RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 C17orf47Q8NEP4 570 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 OR5D13Q8NGL4 314 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 OR9A4Q8NGU2 314 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 ADAMTS16Q8TE57 1224 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 C7orf34Q96L11 122 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 MCCC1Q96RQ3 725 aaPredicted RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 CRNKL1Q9BZJ0 848 aaKnown RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 NXF5Q9H1B4 397 aaKnown RBP5.81□□□□□ -1.48
NUP54-215ENST00000514313 SIGLEC8Q9NYZ4 499 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 ZNF221Q9UK13 617 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 OARD1Q9Y530 152 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 USP16Q9Y5T5 823 aa5.81□□□□□ -1.48
NUP54-215ENST00000514313 FRMPD4Q14CM0 1322 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 CNTNAP2Q9UHC6 1331 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 CCT8L1PA6NM43 557 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 SAP18O00422 153 aaKnown RBP5.8□□□□□ -1.48
NUP54-215ENST00000514313 PI15O43692 258 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 H2BFMP0C1H6 154 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 CT45A10P0DMU9 189 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 OTUD4Q01804 1114 aaKnown RBP5.8□□□□□ -1.48
NUP54-215ENST00000514313 FGL1Q08830 312 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 LAGE3Q14657 143 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 GANABQ14697 944 aaKnown RBP5.8□□□□□ -1.48
NUP54-215ENST00000514313 MRGPRG-AS1Q2M3A8 158 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 SNAI3Q3KNW1 292 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 WSCD1Q658N2 575 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 CCDC80Q76M96 950 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 MOB3BQ86TA1 216 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 SLC25A42Q86VD7 318 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 KRTAP7-1Q8IUC3 87 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 TMEM80Q96HE8 168 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 SLC17A5Q9NRA2 495 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 DHRS4-AS1Q9P1J3 65 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 MEMO1Q9Y316 297 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 USP6P35125 1406 aa5.8□□□□□ -1.48
NUP54-215ENST00000514313 ACOD1A6NK06 481 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 NPIPA7E9PJI5 369 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 G3V3Y1 287 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 H3BMQ9 156 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 GALR3O60755 368 aaPredicted RBP5.79□□□□□ -1.48
NUP54-215ENST00000514313 NPIPA8P0DM63 369 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 MMP11P24347 488 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 P2RY1P47900 373 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 CASP4P49662 377 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 RIPPLY1Q0D2K3 151 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 RAB40BQ12829 278 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 MESDQ14696 234 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 FILIP1LQ4L180 1135 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 TEX44Q53QW1 395 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 FAHD2BQ6P2I3 314 aaPredicted RBP5.79□□□□□ -1.48
NUP54-215ENST00000514313 CDH26Q8IXH8 852 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 ZNF440Q8IYI8 595 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 LRRC75A-AS1Q8N1F1 130 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 OR51G2Q8NGK0 314 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 AENQ8WTP8 325 aaKnown RBP5.79□□□□□ -1.48
NUP54-215ENST00000514313 RNF139Q8WU17 664 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 TRUB1Q8WWH5 349 aaKnown RBP5.79□□□□□ -1.48
NUP54-215ENST00000514313 NR4A3Q92570 626 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 BADQ92934 168 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 TUBGCP3Q96CW5 907 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 FAHD2AQ96GK7 314 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 RBM4BQ9BQ04 359 aaKnown RBP5.79□□□□□ -1.48
NUP54-215ENST00000514313 TRIM15Q9C019 465 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms