RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 GTPBP3Q969Y2 492 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 TMCO6Q96DC7 493 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 MEGF10Q96KG7 1140 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 MAGEB18Q96M61 343 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 JAM3Q9BX67 310 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ALOXE3Q9BYJ1 711 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 DEFB126Q9BYW3 111 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 ADAP2Q9NPF8 381 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 NDUFAF4Q9P032 175 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 SLC7A8Q9UHI5 535 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 MAP4K5Q9Y4K4 846 aa7.34□□□□□ -1.23
LIMCH1-219ENST00000514096 HRKO00198 91 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 TERTO14746 1132 aaKnown RBP7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 DSCR3O14972 297 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 CLDN9O95484 217 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 UMODP07911 640 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 MTHFD2P13995 350 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 HNF1AP20823 631 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 GTF2E2P29084 291 aaKnown RBP7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 CASP3P42574 277 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 SERPINB9P50453 376 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 AP2S1P53680 142 aaPredicted RBP7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 PLA2G7Q13093 441 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 RUNX2Q13950 521 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 ATAD3CQ5T2N8 411 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 OVCH1Q7RTY7 1134 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 KIF18BQ86Y91 864 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 ACOT4Q8N9L9 421 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 SRFBP1Q8NEF9 429 aaKnown RBP7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 BHLHE22Q8NFJ8 381 aaPredicted RBP7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 DEDD2Q8WXF8 326 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 ATOH8Q96SQ7 321 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 SPSB2Q99619 263 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 RMND5AQ9H871 391 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 MIOXQ9UGB7 285 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 TINAGQ9UJW2 476 aa7.34□□□□□ -1.24
LIMCH1-219ENST00000514096 A0A087X1B8 175 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 TRBV11-1A0A0K0K1C0 115 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM8BA6NDV4 472 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 OPN1LWP04000 364 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 HBQ1P09105 142 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ITGAMP11215 1152 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 GALNSP34059 522 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 RYKP34925 604 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 TALDO1P37837 337 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 DEFA1P59665 94 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 DEFA3P59666 94 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 STXBP1P61764 594 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 HSF1Q00613 529 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ZIK1Q3SY52 487 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 DESI1Q6ICB0 168 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 SSX6Q7RTT6 188 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 SIMC1Q8NDZ2 872 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 MYDGFQ969H8 173 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 TLCD1Q96CP7 247 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ZHX1-C8orf76Q96EF9 292 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 OPALINQ96PE5 141 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 MS4A7Q9GZW8 240 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ASF1BQ9NVP2 202 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 TEX10Q9NXF1 929 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 URADA6NGE7 173 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 FAM166BA8MTA8 275 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 CLDN4O14493 209 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 NPHS1O60500 1241 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ADAM11O75078 769 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 CDH16O75309 829 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 CYP7B1O75881 506 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 WISP2O76076 250 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 DXOO77932 396 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 PDYNP01213 254 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 JUNP05412 331 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ANKRD34CP0C6C1 535 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 NR0B1P51843 470 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ACSM2AQ08AH3 577 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 OXA1LQ15070 435 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 CHI3L2Q15782 390 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ACSM2BQ68CK6 577 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 PLEKHG7Q6ZR37 379 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 PPP1R32Q7Z5V6 425 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 COMMD7Q86VX2 200 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 KMT5CQ86Y97 462 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 HPS6Q86YV9 775 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 OR56A3Q8NH54 315 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 PROX1Q92786 737 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 PCBD2Q9H0N5 130 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 WDR41Q9HAD4 459 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 NECTIN3Q9NQS3 549 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 PRELID3BQ9Y3B1 194 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 ATG4BQ9Y4P1 393 aa7.33□□□□□ -1.24
LIMCH1-219ENST00000514096 NPIPA5E9PKD4 350 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PGRMC2O15173 223 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 VPS4BO75351 444 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 CLPXO76031 633 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 AGFG2O95081 481 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SCGB1D2O95969 90 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 RNH1P13489 461 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PCSK2P16519 638 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 GCAP28676 217 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SNTB1Q13884 538 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 EXOSC7Q15024 291 aaKnown RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms