RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 DEPPQ9NTK1 212 aa9.17□□□□□ -0.94
NUP54-203ENST00000504173 CMTM6Q9NX76 183 aa9.17□□□□□ -0.94
NUP54-203ENST00000504173 MKLN1Q9UL63 735 aa9.17□□□□□ -0.94
NUP54-203ENST00000504173 ANGPT4Q9Y264 503 aa9.17□□□□□ -0.94
NUP54-203ENST00000504173 PCDHGA10Q9Y5H3 936 aa9.17□□□□□ -0.94
NUP54-203ENST00000504173 WIF1Q9Y5W5 379 aa9.17□□□□□ -0.94
NUP54-203ENST00000504173 ANKRD33BA6NCL7 494 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 FAM220BPB1ANY3 271 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 B2RBV5 119 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 KIAA0513O60268 411 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 FADS1O60427 444 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 SNX4O95219 450 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 RASAL1O95294 804 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 NGFRP08138 427 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 GUSBP08236 651 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 T-ENOLP0DO92 83 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PTGER4P35408 488 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PTGDSP41222 190 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 SLC25A3Q00325 362 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PMP22Q01453 160 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PLGLB1Q02325 96 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 RBBP4Q09028 425 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 SNTA1Q13424 505 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 MAPK11Q15759 364 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 INAQ16352 499 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PDZK1Q5T2W1 519 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PRAMEF8Q5VWM4 474 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PRAMEF7Q5VXH5 474 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 RPUSD3Q6P087 351 aaKnown RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 NET1Q7Z628 596 aaPredicted RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 MARCH3Q86UD3 253 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PACS2Q86VP3 889 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 IFNEQ86WN2 208 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PTOV1Q86YD1 416 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 ZZZ3Q8IYH5 903 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 DEFB107AQ8IZN7 70 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 METTL25Q8N6Q8 603 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 Q8NA96 180 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 GATSQ8NAP1 163 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 HIPK4Q8NE63 616 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 OR4C3Q8NH37 302 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 FBXO27Q8NI29 283 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 BBS10Q8TAM1 723 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 RNF138Q8WVD3 245 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 REXO5Q96IC2 774 aaKnown RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 ZNF597Q96LX8 424 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 TREX2Q9BQ50 279 aaPredicted RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 SAP130Q9H0E3 1048 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PROK2Q9HC23 129 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 SDHAF3Q9NRP4 125 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 TUBA8Q9NY65 449 aaPredicted RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 ADA2Q9NZK5 511 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 PPP4R1LQ9P1A2 415 aa9.16□□□□□ -0.94
NUP54-203ENST00000504173 BOKQ9UMX3 212 aaPredicted RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.16□□□□□ -0.94
NUP54-203ENST00000504173 POLEQ07864 2286 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 A0A0G2JPF8 293 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 CENPVL1A0A0U1RR11 272 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 A0A1W2PQD3 144 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 PINLYPA6NC86 204 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 C2orf72A6NCS6 295 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 HNRNPCL2B2RXH8 293 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 HNRNPCL3B7ZW38 293 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 ALG1L2C9J202 215 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 NPIPB9F8W1W9 429 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 H3BNH8 94 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 ACOT7O00154 380 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 NME4O00746 187 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 GNB5O14775 395 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 SNPHO15079 494 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 NDUFB5O43674 189 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 HNRNPCL1O60812 293 aaKnown RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 TRIM3O75382 744 aaPredicted RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 UGT2B17O75795 530 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 PGM3O95394 542 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 ANGPTL1O95841 491 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 HNRNPCL4P0DMR1 293 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 PCGF2P35227 344 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 RFC3P40938 356 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 RNF144AP50876 292 aaPredicted RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 GZMMP51124 257 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 EEFSECP57772 596 aaKnown RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 LIPEQ05469 1076 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 INPP5JQ15735 1006 aaPredicted RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 ZNF141Q15928 474 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 ADRM1Q16186 407 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 INTS11Q5TA45 600 aaKnown RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 REEP3Q6NUK4 255 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 ERICH5Q6P6B1 374 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 FAM180AQ6UWF9 173 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 APOOLQ6UXV4 268 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 RINLQ6ZS11 566 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 HMGN2P46Q86SG4 172 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 CALHM3Q86XJ0 350 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 KRT73Q86Y46 540 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 SLC30A8Q8IWU4 369 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 PEX5LQ8IYB4 626 aa9.15□□□□□ -0.94
NUP54-203ENST00000504173 ZFP62Q8NB50 900 aaPredicted RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 RBM15BQ8NDT2 890 aaKnown RBP9.15□□□□□ -0.94
NUP54-203ENST00000504173 OR2T12Q8NG77 320 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms