RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 KCTD4Q8WVF5 259 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 NOL11Q9H8H0 719 aaKnown RBP14.59□□□□□ -0.07
VIM-208ENST00000497849 NPAP1Q9NZP6 1156 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 STOML1Q9UBI4 398 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 A0A096LPK6 155 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 SYCE1LA8MT33 242 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 ZNF814B7Z6K7 855 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 E7EQL1 145 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 GOLGA8RI6L899 631 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 GFAPP14136 432 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 CRABP2P29373 138 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 SERPINB8P50452 374 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 ITGADQ13349 1161 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 SH2D4BQ5SQS7 431 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 BHLHB9Q6PI77 547 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 LRIG3Q6UXM1 1119 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 APOOLQ6UXV4 268 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 ESPNLQ6ZVH7 1005 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 BHLHA15Q7RTS1 189 aaPredicted RBP14.58□□□□□ -0.08
VIM-208ENST00000497849 TBC1D1Q86TI0 1168 aaPredicted RBP14.58□□□□□ -0.08
VIM-208ENST00000497849 TUSC5Q8IXB3 177 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 CENPLQ8N0S6 344 aaPredicted RBP14.58□□□□□ -0.08
VIM-208ENST00000497849 PLD6Q8N2A8 252 aaKnown RBP14.58□□□□□ -0.08
VIM-208ENST00000497849 RFLNBQ8N5W9 214 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 MZB1Q8WU39 189 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 MTBPQ96DY7 904 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 PRR14Q9BWN1 585 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 PFDN4Q9NQP4 134 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 SLC12A4Q9UP95 1085 aa14.58□□□□□ -0.08
VIM-208ENST00000497849 PKD1L1Q8TDX9 2849 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 GOLGA8QA0A0J9YX86 632 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 GOLGA8OA6NCC3 632 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 VWC2LB2RUY7 222 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 GOLGA8NF8WBI6 632 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 H7C417 338 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 TCF21O43680 179 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 PLOD3O60568 738 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 ANGPTL1O95841 491 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 COL6A2P12110 1019 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 ITGA2P17301 1181 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 HNF1AP20823 631 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 RAC1P63000 192 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 C17orf67Q0P5P2 114 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 PPA1Q15181 289 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 CYP27C1Q4G0S4 372 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 SGO1Q5FBB7 561 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 TMEM201Q5SNT2 666 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 HBMQ6B0K9 141 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 GTF2IRD2BQ6EKJ0 949 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 TIFABQ6ZNK6 161 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 GTF2IRD2Q86UP8 949 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 TDRPQ86YL5 185 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 GTPBP8Q8N3Z3 284 aaPredicted RBP14.57□□□□□ -0.08
VIM-208ENST00000497849 RNF128Q8TEB7 428 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 OSTF1Q92882 214 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 DHRS9Q9BPW9 319 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 USB1Q9BQ65 265 aaKnown RBP14.57□□□□□ -0.08
VIM-208ENST00000497849 FAIM2Q9BWQ8 316 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 TMEM185BQ9H7F4 350 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 FARSBQ9NSD9 589 aaKnown RBP14.57□□□□□ -0.08
VIM-208ENST00000497849 TAS2R9Q9NYW1 312 aa14.57□□□□□ -0.08
VIM-208ENST00000497849 LY6HO94772 140 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 ARL1P40616 181 aaPredicted RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 MAGEA12P43365 314 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 TRA2BP62995 288 aaKnown RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 ZNF155Q12901 538 aaPredicted RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 CSTF3Q12996 717 aaKnown RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 TRAF3Q13114 568 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 STK11Q15831 433 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 KRT71Q3SY84 523 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 FAM174BQ3ZCQ3 159 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 CEP85LQ5SZL2 805 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 FAM219BQ5XKK7 198 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 TTC19Q6DKK2 380 aaPredicted RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 Q6ZSR9 355 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 DEPDC4Q8N2C3 294 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 MUC15Q8N387 334 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 SLC9A6Q92581 669 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 ATP6V1E2Q96A05 226 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 TMEM109Q9BVC6 243 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 ROPN1BQ9BZX4 212 aaPredicted RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 ROPN1Q9HAT0 212 aaPredicted RBP14.56□□□□□ -0.08
VIM-208ENST00000497849 KLHL13Q9P2N7 655 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 ARFGEF3Q5TH69 2177 aa14.56□□□□□ -0.08
VIM-208ENST00000497849 KIAA0513O60268 411 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 LYZL6O75951 148 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 IL33O95760 270 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 CSF3P09919 207 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 CLK3P49761 638 aaKnown RBP14.55□□□□□ -0.08
VIM-208ENST00000497849 CCNG1P51959 295 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 PRR5P85299 388 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 SPOCK1Q08629 439 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 IFT88Q13099 833 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 GGTLC2Q14390 218 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 ZNF239Q16600 458 aaKnown RBP14.55□□□□□ -0.08
VIM-208ENST00000497849 DECR1Q16698 335 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 B3GLCTQ6Y288 498 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 C1orf52Q8N6N3 182 aaKnown RBP14.55□□□□□ -0.08
VIM-208ENST00000497849 EXOSC8Q96B26 276 aaKnown RBP14.55□□□□□ -0.08
VIM-208ENST00000497849 RNF145Q96MT1 663 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms