RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	HPCAL1	P37235	193 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	CD79B	P40259	229 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	ASMT	P46597	345 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	EIF1AX	P47813	144 aa	Known RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	PRIM2	P49643	509 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	DIO3	P55073	304 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZNF117	Q03924	483 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	KEAP1	Q14145	624 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	NDUFAF6	Q330K2	333 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	GLYR1	Q49A26	553 aa	Predicted RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	C6orf136	Q5SQH8	315 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR2A2	Q6IF42	318 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	CBLN3	Q6UW01	205 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	RIBC1	Q8N443	379 aa	Predicted RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZNF610	Q8N9Z0	462 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	CHDH	Q8NE62	594 aa	Predicted RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR10D3	Q8NH80	312 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	JADE3	Q92613	823 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZBTB9	Q96C00	473 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	DTNBP1	Q96EV8	351 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	SMR3A	Q99954	134 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	IQCG	Q9H095	443 aa	Known RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	SERHL2	Q9H4I8	314 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	C3orf14	Q9HBI5	128 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZCCHC3	Q9NUD5	404 aa	Known RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	GPATCH2	Q9NW75	528 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	GIN1	Q9NXP7	522 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	MRTO4	Q9UKD2	239 aa	Known RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728	AP4B1	Q9Y6B7	739 aa		10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728		V9GYY5	206 aa	Predicted RBP	10.44	□□□□□ -0.74
VTI1A-208	ENST00000494728		A0A0J9YW62	118 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	C7orf72	A4D263	438 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	TTC36	A6NLP5	189 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	ITM2A	O43736	263 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	EFNA2	O43921	213 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CXCL13	O43927	109 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	SLU7	O95391	586 aa	Known RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	C6orf47	O95873	294 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CHEK2	O96017	543 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	THBD	P07204	575 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CD8B	P10966	210 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	NID1	P14543	1247 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	POU2F1	P14859	743 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	HOXB4	P17483	251 aa	Predicted RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	HOXC12	P31275	282 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	ETV4	P43268	484 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CLK3	P49761	638 aa	Known RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	RPS26	P62854	115 aa	Known RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	POU6F2	P78424	691 aa	Predicted RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	FOXF1	Q12946	379 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	TP53BP2	Q13625	1128 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	MLC1	Q15049	377 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	VPS26B	Q4G0F5	336 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	ANKRD34A	Q69YU3	496 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	PPP4R4	Q6NUP7	873 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	FAM214B	Q7L5A3	538 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CHMP1B	Q7LBR1	199 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	OLIG3	Q7RTU3	272 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	RIMKLA	Q8IXN7	391 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CLEC4F	Q8N1N0	589 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR5AK3P	Q8NH89	298 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CEP70	Q8NHQ1	597 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	PSMA8	Q8TAA3	256 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	TRIM44	Q96DX7	344 aa	Predicted RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	MTERF3	Q96E29	417 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	ZC3HAV1L	Q96H79	300 aa	Known RBP	10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	SNX8	Q9Y5X2	465 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	CUBN	O60494	3623 aa		10.43	□□□□□ -0.74
VTI1A-208	ENST00000494728	NPIPB9	F8W1W9	429 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	LINC01387	J3KSC0	135 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	TNFSF11	O14788	317 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	SS18L1	O75177	396 aa	Predicted RBP	10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	GOSR1	O95249	250 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	BPGM	P07738	259 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	ALOX5	P09917	674 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	LINGO3	P0C6S8	592 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	CRYGS	P22914	178 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	EEFSEC	P57772	596 aa	Known RBP	10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	PPP2R2A	P63151	447 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	TOMM34	Q15785	309 aa	Predicted RBP	10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	EXOC3L2	Q2M3D2	409 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	ATP6AP1L	Q52LC2	224 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	IL23R	Q5VWK5	629 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	CDC73	Q6P1J9	531 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	CAMKMT	Q7Z624	323 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	OR5D16	Q8NGK9	328 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	PIK3IP1	Q96FE7	263 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	PPP3R2	Q96LZ3	170 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	MED18	Q9BUE0	208 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	BTBD2	Q9BX70	525 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	SRXN1	Q9BYN0	137 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	C20orf27	Q9GZN8	174 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	UBQLN4	Q9NRR5	601 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	DUSP22	Q9NRW4	184 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	PROCR	Q9UNN8	238 aa		10.42	□□□□□ -0.74
VTI1A-208	ENST00000494728	ATR	Q13535	2644 aa		10.41	□□□□□ -0.74

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