RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 NFU1Q9UMS0 254 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 ARFGEF3Q5TH69 2177 aa12.6□□□□□ -0.39
PRPF40A-211ENST00000493468 LOC100289279A0A1B0GTE1 492 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 MYO1GB0I1T2 1018 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 VWC2LB2RUY7 222 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 E7EQL1 145 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 TCF21O43680 179 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 GMFGO60234 142 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 PCDH7O60245 1069 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 PGM3O95394 542 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 OTCP00480 354 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 YES1P07947 543 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 IFI6P09912 130 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 COX5AP20674 150 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 PTNP21246 168 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 ELK4P28324 431 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 STX2P32856 288 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 GSTM5P46439 218 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF41P51814 821 aaPredicted RBP12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 EFNA4P52798 201 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 STK11Q15831 433 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 GRAMD1BQ3KR37 738 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 ZNF544Q6NX49 715 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 LETMD1Q6P1Q0 360 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 GAS2L3Q86XJ1 694 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 OR2L13Q8N349 312 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 MSI2Q96DH6 328 aaKnown RBP12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 PHF21BQ96EK2 531 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 TMEM185BQ9H7F4 350 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 BCO1Q9HAY6 547 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 SNX24Q9Y343 169 aa12.59□□□□□ -0.39
PRPF40A-211ENST00000493468 HEATR1Q9H583 2144 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 A0A096LPK6 155 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 CCDC188H7C350 402 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 NDUFS8O00217 210 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 UPK1AO00322 258 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 NDUFB5O43674 189 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 PRKD3O94806 890 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 KCNH1O95259 989 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 NTN1O95631 604 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 OPN1LWP04000 364 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 RPS17P08708 135 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 EIF1P41567 113 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 OR3A2P47893 321 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 MANFP55145 182 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 RAE1P78406 368 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 TMEM108Q6UXF1 575 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 C12orf54Q6X4T0 127 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 FCRLAQ7L513 359 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 LILRA2Q8N149 483 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 SLC43A2Q8N370 569 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 POC1BQ8TC44 478 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 SLC9A6Q92581 669 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 ZMYND19Q96E35 227 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 BBS4Q96RK4 519 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 SRXN1Q9BYN0 137 aa12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 EML4Q9HC35 981 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 DDX18Q9NVP1 670 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-211ENST00000493468 GNG14A0A1W2PPG7 69 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 HMX2A2RU54 273 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 OR5H1A6NKK0 313 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 GJE1A6NN92 205 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 LYZL6O75951 148 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 IGKV1D-16P01601 117 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 DHRS4L1P0CG22 281 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 BMP4P12644 408 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 GGT1P19440 569 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 PTAFRP25105 342 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 RFX3P48380 749 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 SLC18A2Q05940 514 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 CALCOCO2Q13137 446 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 SLC29A2Q14542 456 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 SPIN4Q56A73 249 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 MROH9Q5TGP6 573 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 GALNT18Q6P9A2 607 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 BHLHB9Q6PI77 547 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 TMEM107Q6UX40 140 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 MISPQ8IVT2 679 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 CDYL2Q8N8U2 506 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 ZNF483Q8TF39 744 aaPredicted RBP12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 C16orf78Q8WTQ4 265 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 HTRA1Q92743 480 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 HOXB13Q92826 284 aaPredicted RBP12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 PRR14Q9BWN1 585 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 GRID1Q9ULK0 1009 aa12.57□□□□□ -0.4
PRPF40A-211ENST00000493468 KIF2AO00139 706 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 RGS14O43566 566 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 SMIM24O75264 130 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 OXSR1O95747 527 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 JUNP05412 331 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 RBP1P09455 135 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 LINGO3P0C6S8 592 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 DDCP20711 480 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 SHC1P29353 583 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 TIA1P31483 386 aaKnown RBP eCLIP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 SFTPDP35247 375 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 NR4A2P43354 598 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 SERPINB8P50452 374 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 FABP6P51161 128 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 NCBP2P52298 156 aaKnown RBP eCLIP12.56□□□□□ -0.42e-16■□□□□ 8.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms