RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ALOX12BO75342 701 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 TSPAN7P41732 249 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 TSPAN31Q12999 210 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 NNATQ16517 81 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 SLX4IPQ5VYV7 408 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 LCN10Q6JVE6 187 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 ZNF613Q6PF04 617 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 LANCL3Q6ZV70 420 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 MBOAT2Q6ZWT7 520 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 C9orf40Q8IXQ3 194 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 NLGN4XQ8N0W4 816 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 LSMEM1Q8N8F7 131 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 C17orf47Q8NEP4 570 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 SPSB2Q99619 263 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 SEMA4CQ9C0C4 833 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 AASSQ9UDR5 926 aa12.95□□□□□ -0.34
CLK3-204ENST00000483723 SERINC4A6NH21 518 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 AGRPO00253 132 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 MRPS14O60783 128 aaKnown RBP12.94□□□□□ -0.34
CLK3-204ENST00000483723 CBFA2T3O75081 653 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 HEXBP07686 556 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 HTR1AP08908 422 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 CCL4P13236 92 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 RFX3P48380 749 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 EMP2P54851 167 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 FNDC7Q5VTL7 733 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 BROXQ5VW32 411 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 C12orf73Q69YU5 71 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 TMEM205Q6UW68 189 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 ZNF730Q6ZMV8 503 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 ZNF550Q7Z398 422 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 RNF113BQ8IZP6 322 aaKnown RBP12.94□□□□□ -0.34
CLK3-204ENST00000483723 BPIFB6Q8NFQ5 453 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 RNF31Q96EP0 1072 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 LMF1Q96S06 567 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 CTRCQ99895 268 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 RBM38Q9H0Z9 239 aaKnown RBP12.94□□□□□ -0.34
CLK3-204ENST00000483723 UBQLN4Q9NRR5 601 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 PAK1IP1Q9NWT1 392 aaPredicted RBP12.94□□□□□ -0.34
CLK3-204ENST00000483723 ZNF223Q9UK11 482 aaPredicted RBP12.94□□□□□ -0.34
CLK3-204ENST00000483723 MRTO4Q9UKD2 239 aaKnown RBP12.94□□□□□ -0.34
CLK3-204ENST00000483723 SLC7A7Q9UM01 511 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 TPRKBQ9Y3C4 175 aa12.94□□□□□ -0.34
CLK3-204ENST00000483723 GDF9O60383 454 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 TSPAN2O60636 221 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 ADAM11O75078 769 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 FMO3P31513 532 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SLC35A2P78381 396 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 CDK5Q00535 292 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SHISA6Q6ZSJ9 500 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 RASSF6Q6ZTQ3 369 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SLCO6A1Q86UG4 719 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SPARTQ8N0X7 666 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SUMF1Q8NBK3 374 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 FAM71CQ8NEG0 241 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 PIGXQ8TBF5 258 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 FAM81AQ8TBF8 368 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SGCDQ92629 289 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 DGCR14Q96DF8 476 aaKnown RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 FAM122AQ96E09 287 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 HSPBAP1Q96EW2 488 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 TRIM2Q9C040 744 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 WWTR1Q9GZV5 400 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 WDR54Q9H977 334 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 AKIRIN1Q9H9L7 192 aaPredicted RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 TMEM27Q9HBJ8 222 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SCN3BQ9NY72 215 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 COPS7AQ9UBW8 275 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SLC35A3Q9Y2D2 325 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 PCDHGB1Q9Y5G3 927 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 A0A0B4J2E0 115 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 A0A1B0GX12 115 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SAGE2PA6NJ88 616 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 XPNPEP2O43895 674 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 PRKNO60260 465 aaPredicted RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 MPZL2O60487 215 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 OR6B1O95007 311 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 NTN1O95631 604 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 IGFBP1P08833 259 aaPredicted RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 ZNF28P17035 718 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 TBXA2RP21731 343 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 FPR3P25089 353 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 STAT5AP42229 794 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 FOXL2P58012 376 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 CDC42P60953 191 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 PSPHP78330 225 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SMN1Q16637 294 aaKnown RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 TMEM236Q5W0B7 351 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 LINC00114Q6XXX2 140 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 WDR88Q6ZMY6 472 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 ZNF517Q6ZMY9 492 aaPredicted RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 RBM44Q6ZP01 1051 aaKnown RBP12.93□□□□□ -0.34
CLK3-204ENST00000483723 KCTD8Q6ZWB6 473 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 RRM2BQ7LG56 351 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 SLC29A4Q7RTT9 530 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 MRGPREQ86SM8 312 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 KIF18BQ86Y91 864 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 CCDC103Q8IW40 242 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 POGLUT1Q8NBL1 392 aa12.93□□□□□ -0.34
CLK3-204ENST00000483723 TMEM255BQ8WV15 326 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms