RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 Q71RC1 249 aaPredicted RBP13.68□□□□□ -0.22
LIMS3-203ENST00000480744 P3H2Q8IVL5 708 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 GTPBP8Q8N3Z3 284 aaPredicted RBP13.68□□□□□ -0.22
LIMS3-203ENST00000480744 MTERF3Q96E29 417 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 RNF145Q96MT1 663 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 NPAS1Q99742 590 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 EML4Q9HC35 981 aaKnown RBP13.68□□□□□ -0.22
LIMS3-203ENST00000480744 MED17Q9NVC6 651 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 NTMQ9P121 344 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 SLC17A7Q9P2U7 560 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 MCTS1Q9ULC4 181 aaKnown RBP13.68□□□□□ -0.22
LIMS3-203ENST00000480744 TRAF6Q9Y4K3 522 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 SNX8Q9Y5X2 465 aa13.68□□□□□ -0.22
LIMS3-203ENST00000480744 RAI1Q7Z5J4 1906 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 TMEM114B3SHH9 223 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 TNFSF11O14788 317 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SCAMP2O15127 329 aaKnown RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 ARHGEF9O43307 516 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 CXCL13O43927 109 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 NPHS1O60500 1241 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SMPD2O60906 423 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 PEX11AO75192 247 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SPAG7O75391 227 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 NGFRP08138 427 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 HOXB4P17483 251 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 DDX5P17844 614 aaKnown RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 ME2P23368 584 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 MAPK1P28482 360 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 ADSLP30566 484 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SERPINB4P48594 390 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 RNF144AP50876 292 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 POU6F2P78424 691 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 OCRLQ01968 901 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 LASP1Q14847 261 aaKnown RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 GUSBP1Q15486 140 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 PLPPR5Q32ZL2 321 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 KRTAP21-3Q3LHN1 58 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 Q5PR19 223 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SHEQ5VZ18 495 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 LRIG3Q6UXM1 1119 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 ZCCHC23Q6ZST2 131 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 CXorf67Q86X51 503 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 KRTAP1-3Q8IUG1 177 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 MREGQ8N565 214 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 BANPQ8N9N5 519 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 OR7A2PQ8NGA2 310 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 OR6K3Q8NGY3 331 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 B4GALNT2Q8NHY0 566 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 FAM110BQ8TC76 370 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 CDS1Q92903 461 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 ZBTB8AQ96BR9 441 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 FAM120BQ96EK7 910 aaKnown RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 C18orf12Q96KH6 178 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 PPP3R2Q96LZ3 170 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SMR3AQ99954 134 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 C1orf50Q9BV19 199 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 UBQLN4Q9NRR5 601 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 SIRT3Q9NTG7 399 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-203ENST00000480744 GIN1Q9NXP7 522 aa13.67□□□□□ -0.22
LIMS3-203ENST00000480744 HMGN2P05204 90 aaKnown RBP13.66□□□□□ -0.22
LIMS3-203ENST00000480744 FGF4P08620 206 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 ATP6V1C1P21283 382 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 RPL3P39023 403 aaKnown RBP13.66□□□□□ -0.22
LIMS3-203ENST00000480744 RAC1P63000 192 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 IFFO1Q0D2I5 559 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 TP53BP2Q13625 1128 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 CD226Q15762 336 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 ACKR1Q16570 336 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 UGT3A2Q3SY77 523 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 SPDYE7PQ495Y7 208 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 CPTPQ5TA50 214 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 HBMQ6B0K9 141 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 ZCCHC12Q6PEW1 402 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 BIVMQ86UB2 503 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 TRABD2AQ86V40 505 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 MISPQ8IVT2 679 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 OR2V1Q8NHB1 315 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 PHOSPHO1Q8TCT1 267 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 PIGTQ969N2 578 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 GMPPAQ96IJ6 420 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-203ENST00000480744 ADGRG7Q96K78 797 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 HS3ST6Q96QI5 342 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 CCL19Q99731 98 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 KLHDC3Q9BQ90 382 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 BTBD2Q9BX70 525 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 ZNF395Q9H8N7 513 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-203ENST00000480744 MKS1Q9NXB0 559 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 PAQR5Q9NXK6 330 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-203ENST00000480744 ATP6V1HQ9UI12 483 aa13.66□□□□□ -0.22
LIMS3-203ENST00000480744 NPIPA5A0A0B4J1W7 369 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 A0A0J9YW62 118 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 NPIPA7E9PJI5 369 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 SS18L1O75177 396 aaPredicted RBP13.65□□□□□ -0.22
LIMS3-203ENST00000480744 SKAP2O75563 359 aaPredicted RBP13.65□□□□□ -0.22
LIMS3-203ENST00000480744 NUDT14O95848 222 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 INHBBP09529 407 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 NPIPA8P0DM63 369 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 LAMP1P11279 417 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 FPR1P21462 350 aa13.65□□□□□ -0.22
LIMS3-203ENST00000480744 LCN1P31025 176 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 173.3 ms