RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 CCDC168Q8NDH2 2452 aa16.18■□□□□ 0.18
UPF3A-203ENST00000474056 GOLGA8QA0A0J9YX86 632 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 RNF103-CHMP3A0A140T963 221 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 GOLGA8OA6NCC3 632 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 GOLGA8NF8WBI6 632 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 LINC01387J3KSC0 135 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 CPSF4O95639 269 aaKnown RBP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 ATP6V1C1P21283 382 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 MATN1P21941 496 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 RNF144AP50876 292 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 CLNS1AP54105 237 aaKnown RBP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 NME5P56597 212 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 OCRLQ01968 901 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 SPANXN4Q5MJ08 99 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 ATG16L1Q676U5 607 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 CHMP1BQ7LBR1 199 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 P4HA3Q7Z4N8 544 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 C6orf120Q7Z4R8 191 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 MISPQ8IVT2 679 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 WDR75Q8IWA0 830 aaKnown RBP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 GOT1L1Q8NHS2 421 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 PHOSPHO1Q8TCT1 267 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 FIG4Q92562 907 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 LRRC46Q96FV0 321 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 SLC35G5Q96KT7 338 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 TEX37Q96LM6 180 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 SFXN3Q9BWM7 321 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 PINK1Q9BXM7 581 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 WDR55Q9H6Y2 383 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-203ENST00000474056 SLC24A3Q9HC58 644 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 AIG1Q9NVV5 245 aa16.17■□□□□ 0.18
UPF3A-203ENST00000474056 ABCA4P78363 2273 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 AKAP9Q99996 3911 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 ENO4A6NNW6 628 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 HDAC3O15379 428 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 EPHA3P29320 983 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 CASP9P55211 416 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 UFM1P61960 85 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 ZNF117Q03924 483 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 DPY19L1Q2PZI1 675 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 PLPPR5Q32ZL2 321 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 FLYWCH1Q4VC44 716 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 BHLHB9Q6PI77 547 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 TMEM200AQ86VY9 491 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 ZZZ3Q8IYH5 903 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 METTL25Q8N6Q8 603 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 B4GALNT2Q8NHY0 566 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 RAB3IL1Q8TBN0 382 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 ARL8AQ96BM9 186 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 ZNF845Q96IR2 970 aaPredicted RBP16.16■□□□□ 0.18
UPF3A-203ENST00000474056 MANSC1Q9H8J5 431 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 HHATLQ9HCP6 504 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 MED17Q9NVC6 651 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 CRIM1Q9NZV1 1036 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 FOXD3Q9UJU5 478 aaPredicted RBP16.16■□□□□ 0.18
UPF3A-203ENST00000474056 AP4B1Q9Y6B7 739 aa16.16■□□□□ 0.18
UPF3A-203ENST00000474056 A0A087WZY1 265 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 PRSS51A0A1B0GVH4 220 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 SLC22A20A6NK97 555 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 C9JVG2 144 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 E9PBE3 544 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 OIP5O43482 229 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 TNFRSF21O75509 655 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 TNFSF13O75888 250 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 SOX30O94993 753 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 TACC2O95359 2948 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ZNF17P17021 662 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 CAPN3P20807 821 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 IL12AP29459 219 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 KIR2DL3P43628 341 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ZNF41P51814 821 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ATP12AP54707 1039 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 EEFSECP57772 596 aaKnown RBP16.15■□□□□ 0.18
UPF3A-203ENST00000474056 FAM174BQ3ZCQ3 159 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 AGBL2Q5U5Z8 902 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ANXA8L1Q5VT79 327 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 OLIG3Q7RTU3 272 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 LUZP2Q86TE4 346 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 GGNQ86UU5 652 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ZNF614Q8N883 585 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ZNF527Q8NB42 609 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 CHDHQ8NE62 594 aaPredicted RBP16.15■□□□□ 0.18
UPF3A-203ENST00000474056 POC1BQ8TC44 478 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ACTRT2Q8TDY3 377 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 SDF2Q99470 211 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 HOXD1Q9GZZ0 328 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 OR51I1Q9H343 314 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 ACBD3Q9H3P7 528 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 PCDHGB4Q9UN71 923 aa16.15■□□□□ 0.18
UPF3A-203ENST00000474056 A0A1W2PNV4 684 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 TRPC5OSA6NMA1 111 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 NPIPB9F8W1W9 429 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 UQCRC2P22695 453 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 PSMA4P25789 261 aaKnown RBP16.14■□□□□ 0.17
UPF3A-203ENST00000474056 S100A3P33764 101 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 PEX19P40855 299 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 PON3Q15166 354 aa16.14■□□□□ 0.17
UPF3A-203ENST00000474056 NDUFAF6Q330K2 333 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms