RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 FAM214BQ7L5A3 538 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 HOMEZQ8IX15 550 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 ZNF610Q8N9Z0 462 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 WFDC11Q8NEX6 87 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 OR10D3Q8NH80 312 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 PSMA8Q8TAA3 256 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 ACTRT2Q8TDY3 377 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 AENQ8WTP8 325 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 CDS1Q92903 461 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 ZBTB8AQ96BR9 441 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 SH3YL1Q96HL8 342 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 MARK4Q96L34 752 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 RNF145Q96MT1 663 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 BTBD2Q9BX70 525 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 DUSP22Q9NRW4 184 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 ELOVL5Q9NYP7 299 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 ZDHHC2Q9UIJ5 367 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 EIF3LQ9Y262 564 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 ARID1AO14497 2285 aa16.86■□□□□ 0.29
CCDC88B-206ENST00000473405 A0A1W2PQD3 144 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 CASKO14936 926 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 SKAP2O75563 359 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 SLU7O95391 586 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 POU2F1P14859 743 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 CRYGSP22914 178 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 MAPK1P28482 360 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 HOXC12P31275 282 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 SERPINB5P36952 375 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 RPL3P39023 403 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 EIF1AXP47813 144 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 PRIM2P49643 509 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 POU6F2P78424 691 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 ZNF550Q7Z398 422 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 CXorf67Q86X51 503 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 KRTCAP2Q8N6L1 136 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 POC1BQ8TC44 478 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 STACQ99469 402 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 SLC39A3Q9BRY0 314 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 MED18Q9BUE0 208 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 CXorf36Q9H7Y0 433 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 HHATLQ9HCP6 504 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 PROCRQ9UNN8 238 aa16.85■□□□□ 0.29
CCDC88B-206ENST00000473405 SCDO00767 359 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 ADAMDEC1O15204 470 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 TYROBPO43914 113 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 SS18L1O75177 396 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 HSPA4LO95757 839 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 OPN1LWP04000 364 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 BPGMP07738 259 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 IL11P20809 199 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 ETV4P43268 484 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 ZNF41P51814 821 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 ZNF117Q03924 483 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 IFFO1Q0D2I5 559 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 SGCBQ16585 318 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 ATP6AP1LQ52LC2 224 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 CPTPQ5TA50 214 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 MISPQ8IVT2 679 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 WDR75Q8IWA0 830 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 RIMKLAQ8IXN7 391 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 POM121Q96HA1 1249 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 PIGUQ9H490 435 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 TMEM185BQ9H7F4 350 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 GPATCH2Q9NW75 528 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 GIN1Q9NXP7 522 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 ZNF226Q9NYT6 803 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 SNX8Q9Y5X2 465 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 PRR14LQ5THK1 2151 aa16.84■□□□□ 0.29
CCDC88B-206ENST00000473405 C16orf97H3BN30 126 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 TNFSF11O14788 317 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 OIP5O43482 229 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 LINGO3P0C6S8 592 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 HPGDP15428 266 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 DDX5P17844 614 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 KCNJ5P48544 419 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 RAC1P63000 192 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 TP53BP2Q13625 1128 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 IL23RQ5VWK5 629 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 PPP4R4Q6NUP7 873 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 CDC73Q6P1J9 531 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 FNDC5Q8NAU1 212 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 OR6K3Q8NGY3 331 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 B4GALNT2Q8NHY0 566 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 OR5P2Q8WZ92 322 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 COQ8BQ96D53 544 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 GMPPAQ96IJ6 420 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 HS3ST6Q96QI5 342 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 ROPN1BQ9BZX4 212 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 ROPN1Q9HAT0 212 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 BEX4Q9NWD9 120 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 STOML1Q9UBI4 398 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 CLEC4AQ9UMR7 237 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 KCNE3Q9Y6H6 103 aa16.83■□□□□ 0.28
CCDC88B-206ENST00000473405 DSCAMO60469 2012 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 A0A0J9YW62 118 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 CXCL13O43927 109 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 LYPLA1O75608 230 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 C6orf47O95873 294 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 NID1P14543 1247 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms