RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	FBXL16	Q8N461	479 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	C15orf54	Q8N8G6	183 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	DTNBP1	Q96EV8	351 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	C4orf36	Q96KX1	117 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	TPPP3	Q9BW30	176 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	TSSK1B	Q9BXA7	367 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	GSDMC	Q9BYG8	508 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	SLITRK2	Q9H156	845 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	PPDPF	Q9H3Y8	114 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	RIBC2	Q9H4K1	309 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	ZNF702P	Q9H963	129 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	ZNF275	Q9NSD4	429 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	WRAP73	Q9P2S5	460 aa	Predicted RBP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	SPRR3	Q9UBC9	169 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	ISY1	Q9ULR0	285 aa	Known RBP	2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	MOK	Q9UQ07	419 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	CA5B	Q9Y2D0	317 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	GSTK1	Q9Y2Q3	226 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	USP16	Q9Y5T5	823 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	AP1M2	Q9Y6Q5	423 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	KIF25-AS1	Q9Y6Z4	181 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044	LRRK1	Q38SD2	2015 aa		2.8	□□□□□ -1.96
PTCD3-209	ENST00000472044		A0A1W2PNV4	684 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044		B4DXG7	233 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	PPIAL4D	F5H284	164 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	STX7	O15400	261 aa	Known RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	EFNA2	O43921	213 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	SERF1A	O75920	110 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	STS	P08842	583 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	HSPA5	P11021	654 aa	Known RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	KRT13	P13646	458 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	PGC	P20142	388 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	NT5E	P21589	574 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	HPD	P32754	393 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	DLST	P36957	453 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	EFNA3	P52797	238 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	MRPS11	P82912	194 aa	Known RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	KLHL30	Q0D2K2	578 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	DNAJC21	Q5F1R6	531 aa	Known RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR5M10	Q6IEU7	315 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	SULT1C3	Q6IMI6	304 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	FAHD2B	Q6P2I3	314 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	DPY19L4	Q7Z388	723 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	TMEM17	Q86X19	198 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	C17orf82	Q86X59	251 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	M1AP	Q8TC57	530 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	AEN	Q8WTP8	325 aa	Known RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	SPRYD4	Q8WW59	207 aa	Predicted RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	RSPH1	Q8WYR4	309 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	FAM122A	Q96E09	287 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	FAHD2A	Q96GK7	314 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	SERAC1	Q96JX3	654 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	DUSP16	Q9BY84	665 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	FARSB	Q9NSD9	589 aa	Known RBP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	SH3BGRL2	Q9UJC5	107 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	KLHL21	Q9UJP4	597 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	PDE10A	Q9Y233	779 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	FLVCR1	Q9Y5Y0	555 aa		2.79	□□□□□ -1.96
PTCD3-209	ENST00000472044	FRMPD3	Q5JV73	1810 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	KLF18	A0A0U1RQI7	1052 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR7A17	O14581	309 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR1F1	O43749	312 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	TBX19	O60806	448 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	UFL1	O94874	794 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	PCCB	P05166	539 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	KRTAP1-4	P0C5Y4	121 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	DRD5	P21918	477 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	SOX6	P35712	828 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	MAGEA5	P43359	124 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	BDKRB1	P46663	353 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	STAR	P49675	285 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	LIM2	P55344	173 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	OC90	Q02509	493 aa	Predicted RBP	2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	ELP6	Q0PNE2	266 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	TAF7	Q15545	349 aa	Predicted RBP	2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	MAPK6	Q16659	721 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	NDUFA9	Q16795	377 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	TIGIT	Q495A1	244 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	SLC36A3	Q495N2	470 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	OR2B11	Q5JQS5	317 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	PAGE2B	Q5JRK9	111 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	ZNF658	Q5TYW1	1059 aa	Predicted RBP	2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	UBQLNL	Q8IYU4	475 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	CNIH3	Q8TBE1	160 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	RAET1E	Q8TD07	263 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	TRUB1	Q8WWH5	349 aa	Known RBP	2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	OSTF1	Q92882	214 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	CAB39L	Q9H9S4	337 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	TMOD2	Q9NZR1	351 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	BLOC1S6	Q9UL45	172 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	CLEC4E	Q9ULY5	219 aa		2.78	□□□□□ -1.96
PTCD3-209	ENST00000472044	DHRS7C	A6NNS2	312 aa		2.77	□□□□□ -1.97
PTCD3-209	ENST00000472044	WWP2	O00308	870 aa		2.77	□□□□□ -1.97
PTCD3-209	ENST00000472044	ZSCAN12	O43309	604 aa		2.77	□□□□□ -1.97
PTCD3-209	ENST00000472044	GPX5	O75715	221 aa		2.77	□□□□□ -1.97
PTCD3-209	ENST00000472044	TSPY4	P0CV99	314 aa		2.77	□□□□□ -1.97
PTCD3-209	ENST00000472044	TSPY10	P0CW01	314 aa		2.77	□□□□□ -1.97

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