RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C1QCP02747 245 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 HOXD4P09016 255 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-205ENST00000465238 CELA3AP09093 270 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 HPGDP15428 266 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 PTPN6P29350 595 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 PTGDSP41222 190 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 GRAMD1BQ3KR37 738 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 ARHGAP11BQ3KRB8 267 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 LRIF1Q5T3J3 769 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 WLSQ5T9L3 541 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 TIGD3Q6B0B8 471 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 SDF2Q99470 211 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 NMUR2Q9GZQ4 415 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 HOXD1Q9GZZ0 328 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 RAD21L1Q9H4I0 556 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 EXO5Q9H790 373 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 UBQLN4Q9NRR5 601 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 FLRT3Q9NZU0 649 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 FAM215AQ9Y5M1 114 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 WIF1Q9Y5W5 379 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 FREM3P0C091 2139 aa16.12■□□□□ 0.17
COL7A1-205ENST00000465238 MED13LQ71F56 2210 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 TRGV5A0A0B4J1U4 118 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 LRRC3CA6NJW4 275 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 CLIC1O00299 241 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 SCDO00767 359 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 SLC22A2O15244 555 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 STX11O75558 287 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 GLI4P10075 376 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 TBXA2RP21731 343 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 CRATP43155 626 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 TESK1Q15569 626 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 FLYWCH1Q4VC44 716 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.11■□□□□ 0.17
COL7A1-205ENST00000465238 RTL6Q6ICC9 239 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 ZAR1Q86SH2 424 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 MARCH3Q86UD3 253 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 CHDHQ8NE62 594 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-205ENST00000465238 OR4C3Q8NH37 302 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 RNF138Q8WVD3 245 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 NTNG2Q96CW9 530 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 AURKBQ96GD4 344 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-205ENST00000465238 GNRHR2Q96P88 292 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 ZNF703Q9H7S9 590 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-205ENST00000465238 QPCTLQ9NXS2 382 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 SLAMF8Q9P0V8 285 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 PPP4R1LQ9P1A2 415 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 TNFRSF10DQ9UBN6 386 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-205ENST00000465238 KCNN3Q9UGI6 736 aa16.11■□□□□ 0.17
COL7A1-205ENST00000465238 SETD2Q9BYW2 2564 aaPredicted RBP16.11■□□□□ 0.17
COL7A1-205ENST00000465238 LOC100653049A0A140TA62 436 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 FAM47E-STBD1D6RA91 191 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 HMGN4O00479 90 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 SNPHO15079 494 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 KRT34O76011 436 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 NGFRP08138 427 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 RFPL3SP0C7P2 107 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 GABRA1P14867 456 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 PPIBP23284 216 aaKnown RBP16.1■□□□□ 0.17
COL7A1-205ENST00000465238 GDF1P27539 372 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 RIPPLY3P57055 190 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 TOMM20Q15388 145 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 MMEL1Q495T6 779 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 GPAT3Q53EU6 434 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 COX20Q5RI15 118 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 C1orf185Q5T7R7 199 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 FNDC7Q5VTL7 733 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 HEPHL1Q6MZM0 1159 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 SPNS3Q6ZMD2 512 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 DHDDSQ86SQ9 333 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 MTDHQ86UE4 582 aaKnown RBP16.1■□□□□ 0.17
COL7A1-205ENST00000465238 PLCZ1Q86YW0 608 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 DPP10Q8N608 796 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 ZNF527Q8NB42 609 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 ROPN1LQ96C74 230 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 DTNBP1Q96EV8 351 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 ZNF559Q9BR84 538 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 HHATLQ9HCP6 504 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 ACKR4Q9NPB9 350 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 SLC25A37Q9NYZ2 338 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 ARMCX1Q9P291 453 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 LIPT1Q9Y234 373 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 C15orf41Q9Y2V0 281 aa16.1■□□□□ 0.17
COL7A1-205ENST00000465238 NCKAP5O14513 1909 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ARHGAP21Q5T5U3 1957 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 MTORP42345 2549 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ANKHD1Q8IWZ3 2542 aaKnown RBP16.09■□□□□ 0.17
COL7A1-205ENST00000465238 A0A0G2JNJ9 132 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 EVPLLA8MZ36 301 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ALG1L2C9J202 215 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 NDUFB5O43674 189 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 CBR3O75828 277 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 TRAPPC6AO75865 159 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 OXSR1O95747 527 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ANGPTL1O95841 491 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ETFAP13804 333 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 HOXB9P17482 250 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-205ENST00000465238 ATP12AP54707 1039 aa16.09■□□□□ 0.17
COL7A1-205ENST00000465238 GAS1P54826 345 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms