RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 IFNEQ86WN2 208 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 POU5F2Q8N7G0 328 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 FAM83FQ8NEG4 500 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-204ENST00000463487 OR8J3Q8NGG0 315 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 B4GALNT2Q8NHY0 566 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 BBS10Q8TAM1 723 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 PRR7Q8TB68 274 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 RCN3Q96D15 328 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 TMEM19Q96HH6 336 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 SPATA9Q9BWV2 254 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 OR2B2Q9GZK3 357 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 SLC38A1Q9H2H9 487 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 ARMC7Q9H6L4 198 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-204ENST00000463487 MED11Q9P086 117 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 FBXL2Q9UKC9 423 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 AP3M1Q9Y2T2 418 aa18.02■□□□□ 0.48
COL9A3-204ENST00000463487 ZNF264O43296 627 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 EIF4E2O60573 245 aaKnown RBP18.01■□□□□ 0.47
COL9A3-204ENST00000463487 NUDT14O95848 222 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 CSTAP01040 98 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 DBIP07108 87 aaKnown RBP18.01■□□□□ 0.47
COL9A3-204ENST00000463487 CELA3AP09093 270 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 IL7RP16871 459 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 SLC6A2P23975 617 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 MTPNP58546 118 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 HSF1Q00613 529 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 CAPRIN1Q14444 709 aaKnown RBP18.01■□□□□ 0.47
COL9A3-204ENST00000463487 AAGABQ6PD74 315 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 KRT73Q86Y46 540 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 SPPL2CQ8IUH8 684 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 SLC30A8Q8IWU4 369 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 CMIPQ8IY22 773 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 TMCO5AQ8N6Q1 288 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 TOR1AIP2Q8NFQ8 470 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 TREX2Q9BQ50 279 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-204ENST00000463487 ECSITQ9BQ95 431 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 SLC6A15Q9H2J7 730 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 TMEM38AQ9H6F2 299 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 ZNF232Q9UNY5 417 aa18.01■□□□□ 0.47
COL9A3-204ENST00000463487 RP1L1Q8IWN7 2480 aaPredicted RBP18■□□□□ 0.47
COL9A3-204ENST00000463487 A0A087WZY1 265 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 AGAP5A6NIR3 686 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 LINC01387J3KSC0 135 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 AIM2O14862 343 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 ARAFP10398 606 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 ADH7P40394 386 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 P2RX1P51575 399 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 CDK6Q00534 326 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 RBBP4Q09028 425 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 LARS2Q15031 903 aaKnown RBP18■□□□□ 0.47
COL9A3-204ENST00000463487 CD226Q15762 336 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 ZSWIM7Q19AV6 140 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 LIN52Q52LA3 116 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 WLSQ5T9L3 541 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 NANOGP8Q6NSW7 305 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 REEP3Q6NUK4 255 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 SERPINA11Q86U17 422 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 C11orf65Q8NCR3 313 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 BCAS4Q8TDM0 211 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 WDR60Q8WVS4 1066 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 C1GALT1C1Q96EU7 318 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 SH3YL1Q96HL8 342 aaPredicted RBP18■□□□□ 0.47
COL9A3-204ENST00000463487 PIGQQ9BRB3 760 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 SPATA5L1Q9BVQ7 753 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 RTN4RQ9BZR6 473 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 NANOGQ9H9S0 305 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 STOML1Q9UBI4 398 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 OSGIN2Q9Y236 505 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 ANGPT4Q9Y264 503 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 IFT52Q9Y366 437 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 L3MBTL1Q9Y468 752 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 LIPGQ9Y5X9 500 aa18■□□□□ 0.47
COL9A3-204ENST00000463487 A0A1B0GUH1 482 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 PRAMEF27A3QJZ7 478 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 GMFGO60234 142 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 ZIC2O95409 532 aaPredicted RBP17.99■□□□□ 0.47
COL9A3-204ENST00000463487 ACTL6AO96019 429 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 TPOP07202 933 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 STSP08842 583 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 HK1P19367 917 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 UQCRFS1P47985 274 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 NUDT2P50583 147 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 KCNC4Q03721 635 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 CBFBQ13951 182 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 SCARB2Q14108 478 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 FGFBP1Q14512 234 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 EIF2S3LQ2VIR3 472 aaKnown RBP17.99■□□□□ 0.47
COL9A3-204ENST00000463487 GLYR1Q49A26 553 aaPredicted RBP17.99■□□□□ 0.47
COL9A3-204ENST00000463487 EIPR1Q53HC9 387 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 WIPI1Q5MNZ9 446 aaPredicted RBP17.99■□□□□ 0.47
COL9A3-204ENST00000463487 RAET1LQ5VY80 246 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 ENPP6Q6UWR7 440 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 YRDCQ86U90 279 aaKnown RBP17.99■□□□□ 0.47
COL9A3-204ENST00000463487 TREML1Q86YW5 311 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 PM20D2Q8IYS1 436 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 HIPK4Q8NE63 616 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 NFKBIDQ8NI38 313 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 FAM57AQ8TBR7 257 aa17.99■□□□□ 0.47
COL9A3-204ENST00000463487 MAL2Q969L2 176 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms