RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MAGEB1P43366 347 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 ST8SIA6P61647 398 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 CDK5Q00535 292 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 ELOAQ14241 798 aaKnown RBP11.6□□□□□ -0.55
HDAC4-208ENST00000463007 GPR68Q15743 365 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 PSRC1Q6PGN9 363 aaPredicted RBP11.6□□□□□ -0.55
HDAC4-208ENST00000463007 TEX261Q6UWH6 196 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 FAM92BQ6ZTR7 304 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 GLRX5Q86SX6 157 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 MORN4Q8NDC4 146 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 OR51A7Q8NH64 312 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 TRMT10AQ8TBZ6 339 aaKnown RBP11.6□□□□□ -0.55
HDAC4-208ENST00000463007 DHRS9Q9BPW9 319 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 FAIM2Q9BWQ8 316 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 GTPBP2Q9BX10 602 aaKnown RBP11.6□□□□□ -0.55
HDAC4-208ENST00000463007 RDH8Q9NYR8 311 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 U3KQ87 197 aa11.6□□□□□ -0.55
HDAC4-208ENST00000463007 A0A1W2PRQ8 180 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 SLC9B1P1A6NJY1 282 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 CDC42EP2O14613 210 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 SMAD9O15198 467 aaKnown RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ACADMP11310 421 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 MYOGP15173 224 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 DNASE1P24855 282 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 PYCR1P32322 319 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 BSGP35613 385 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 SOX9P48436 509 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 PER3P56645 1201 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ZNF155Q12901 538 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 KRT33BQ14525 404 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 LCTLQ6UWM7 567 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 OR51J1Q9H342 316 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 A4GALTQ9NPC4 353 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ICKQ9UPZ9 632 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 CACNG2Q9Y698 323 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 TRBV23OR9-2A0A075B6M9 112 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 TRDV1A0A1B0GX56 115 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 DRD3P35462 400 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 CLCNKAP51800 687 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 GAS1P54826 345 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 MINDY4Q4G0A6 757 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 C6orf132Q5T0Z8 1188 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 SIAH3Q8IW03 269 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ZNF433Q8N7K0 673 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 FAM181AQ8N9Y4 354 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 SPERTQ8NA61 448 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ZNF527Q8NB42 609 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 GALNT11Q8NCW6 608 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 DUSP18Q8NEJ0 188 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 SETD7Q8WTS6 366 aaKnown RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 AIF1LQ9BQI0 150 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ALG8Q9BVK2 526 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.59□□□□□ -0.551e-6■■■□□ 16.9
HDAC4-208ENST00000463007 RHBGQ9H310 441 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 METTL17Q9H7H0 456 aaPredicted RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 NEUROD4Q9HD90 331 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 BRD7Q9NPI1 651 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 C12orf4Q9NQ89 552 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 KCNN3Q9UGI6 736 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ADAM30Q9UKF2 790 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 DOCK8Q8NF50 2099 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 TMEM129A0AVI4 362 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 PRR19A6NJB7 356 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 NDUFS4O43181 175 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 CLDN12P56749 244 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 TAS2R38P59533 333 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 TGM3Q08188 693 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ENPP2Q13822 863 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 EXOSC2Q13868 293 aaKnown RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 AGERQ15109 404 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 FNDC3BQ53EP0 1204 aaKnown RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 BICRALQ6AI39 1079 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 C17orf47Q8NEP4 570 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 OR9A2Q8NGT5 310 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 ZNF671Q8TAW3 534 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 PIGXQ8TBF5 258 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 HSD17B8Q92506 261 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 MCHR1Q99705 422 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 POLHQ9Y253 713 aa11.59□□□□□ -0.55
HDAC4-208ENST00000463007 EXOSC1Q9Y3B2 195 aaKnown RBP11.59□□□□□ -0.55
HDAC4-208ENST00000463007 MDC1Q14676 2089 aaKnown RBP11.58□□□□□ -0.56
HDAC4-208ENST00000463007 A0A1W2PPV9 198 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 ANKRD61A6NGH8 418 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 HNRNPCL2B2RXH8 293 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 NFATC1O95644 943 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 PCCBP05166 539 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 NOS3P29474 1203 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 PITPNBP48739 271 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 BTN1A1Q13410 526 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 SNTA1Q13424 505 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 C2orf27AQ580R0 203 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 ENTPD8Q5MY95 495 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 C1orf94Q6P1W5 598 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 IKBIPQ70UQ0 350 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 CXXC5Q7LFL8 322 aaKnown RBP11.58□□□□□ -0.56
HDAC4-208ENST00000463007 NUDT13Q86X67 352 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 ZNF687Q8N1G0 1237 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 ARL14Q8N4G2 192 aa11.58□□□□□ -0.56
HDAC4-208ENST00000463007 C12orf76Q8N812 135 aaPredicted RBP11.58□□□□□ -0.56
HDAC4-208ENST00000463007 ZNF784Q8NCA9 323 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms