RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 JSRP1Q96MG2 331 aaPredicted RBP6.62□□□□□ -1.35
USP54-208ENST00000461520 FRG2BQ96QU4 278 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 ZNF559Q9BR84 538 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 KLK15Q9H2R5 256 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 CDC42EP4Q9H3Q1 356 aaKnown RBP6.62□□□□□ -1.35
USP54-208ENST00000461520 ZBTB26Q9HCK0 441 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 TEX10Q9NXF1 929 aaPredicted RBP6.62□□□□□ -1.35
USP54-208ENST00000461520 ALKBH4Q9NXW9 302 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 NINJ2Q9NZG7 142 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 SPRR3Q9UBC9 169 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 XPR1Q9UBH6 696 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 PCTPQ9UKL6 214 aa6.62□□□□□ -1.35
USP54-208ENST00000461520 DNHD1Q96M86 4753 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 A0A1W2PS29 197 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 C1orf226A1L170 272 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 GOLGA6L10A6NI86 522 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 HSPB2A8KAH6 182 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CDH16O75309 829 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ACSL3O95573 720 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 EPPINO95925 133 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 HPNP05981 417 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CD1AP06126 327 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 KLK1P06870 262 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 RPS17P08708 135 aaKnown RBP6.61□□□□□ -1.35
USP54-208ENST00000461520 CT62P0C5K7 136 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CPMP14384 443 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 PORP16435 677 aaPredicted RBP6.61□□□□□ -1.35
USP54-208ENST00000461520 NAGAP17050 411 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 GDF1P27539 372 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CASP3P42574 277 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 XKP51811 444 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 FBXW4P57775 412 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 RPP38P78345 283 aaKnown RBP6.61□□□□□ -1.35
USP54-208ENST00000461520 SF3B4Q15427 424 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP54-208ENST00000461520 HSPB2Q16082 182 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 WHAMMP3Q1A5X7 153 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 C6orf163Q5TEZ5 329 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 SLC48A1Q6P1K1 146 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 TMEM81Q6P7N7 255 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 LIX1LQ8IVB5 337 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 PM20D2Q8IYS1 436 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 METTL4Q8N3J2 472 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ZNF615Q8N8J6 731 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 OR7G1Q8NGA0 311 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 OR4F6Q8NGB9 312 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 SPPL2AQ8TCT8 520 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 DOK4Q8TEW6 326 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 UCN3Q969E3 161 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ADIPOR1Q96A54 375 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CLPTM1LQ96KA5 538 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 MRGPRX4Q96LA9 322 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 RILPQ96NA2 401 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 PAFAH2Q99487 392 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 FMO2Q99518 471 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 MRPL57Q9BQC6 102 aaKnown RBP6.61□□□□□ -1.35
USP54-208ENST00000461520 ANGPTL4Q9BY76 406 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 MRPL1Q9BYD6 325 aaKnown RBP6.61□□□□□ -1.35
USP54-208ENST00000461520 MRPL46Q9H2W6 279 aaKnown RBP6.61□□□□□ -1.35
USP54-208ENST00000461520 UBQLN3Q9H347 655 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ELOVL6Q9H5J4 265 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 BRF2Q9HAW0 419 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ASB6Q9NWX5 421 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 JKAMPQ9P055 326 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ZNF180Q9UJW8 692 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CES1P1Q9UKY3 287 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 CFL2Q9Y281 166 aa6.61□□□□□ -1.35
USP54-208ENST00000461520 ANKHD1Q8IWZ3 2542 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 ZNF469Q96JG9 3925 aaPredicted RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 C15orf38-AP3S2A0A0A6YYH1 394 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 POC1B-GALNT4F8VUJ3 575 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 SYT5O00445 386 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 SLC43A1O75387 559 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 URI1O94763 535 aaPredicted RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 ZWINTO95229 277 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 OTCP00480 354 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 ATP1B1P05026 303 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 S1PR1P21453 382 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 NT5EP21589 574 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 GPX3P22352 226 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 ABCD3P28288 659 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 CEACAM8P31997 349 aaPredicted RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 TIMP3P35625 211 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 DEKP35659 375 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 TRPC1P48995 793 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 CDK9P50750 372 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 MAPK12P53778 367 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 DLX5P56178 289 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 TRA2BP62995 288 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 CRYZQ08257 329 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 MYBPHQ13203 477 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 PRICKLE4Q2TBC4 344 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 GLE1Q53GS7 698 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 NHSL2Q5HYW2 709 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 UBAP2Q5T6F2 1119 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 LGSNQ5TDP6 509 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 VWA1Q6PCB0 445 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 ARSKQ6UWY0 536 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 COMMD6Q7Z4G1 85 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 WDR53Q7Z5U6 358 aaPredicted RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 TMEM200AQ86VY9 491 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms