RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 POU6F2P78424 691 aaPredicted RBP12.99□□□□□ -0.33
SDC1-204ENST00000429035 FOXF1Q12946 379 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 LASP1Q14847 261 aaKnown RBP12.99□□□□□ -0.33
SDC1-204ENST00000429035 KIAA0040Q15053 153 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 TMEM44Q2T9K0 475 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 PLPPR5Q32ZL2 321 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 MFSD12Q6NUT3 480 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 PLEKHM3Q6ZWE6 761 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 C10orf107Q8IVU9 208 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 GTPBP8Q8N3Z3 284 aaPredicted RBP12.99□□□□□ -0.33
SDC1-204ENST00000429035 ZNF614Q8N883 585 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 SLC16A11Q8NCK7 471 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 OR6Y1Q8NGX8 325 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 B4GALNT2Q8NHY0 566 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 PPP1R14CQ8TAE6 165 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 AGR3Q8TD06 166 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 ZBTB8AQ96BR9 441 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 PLPPR2Q96GM1 343 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 C16orf58Q96GQ5 468 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 MARK4Q96L34 752 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 TXLNGYQ9BZA5 131 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 ZCCHC3Q9NUD5 404 aaKnown RBP12.99□□□□□ -0.33
SDC1-204ENST00000429035 FBXO34Q9NWN3 711 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 OXSMQ9NWU1 459 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 PAQR5Q9NXK6 330 aaPredicted RBP12.99□□□□□ -0.33
SDC1-204ENST00000429035 CCL27Q9Y4X3 112 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 SNX8Q9Y5X2 465 aa12.99□□□□□ -0.33
SDC1-204ENST00000429035 NUP214P35658 2090 aaPredicted RBP12.99□□□□□ -0.33
SDC1-204ENST00000429035 NSD1Q96L73 2696 aaPredicted RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 A0A0J9YW62 118 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 KIF2AO00139 706 aaPredicted RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 PLAUP00749 431 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 TUBBP07437 444 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 IFI6P09912 130 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 PPP3CBP16298 524 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 ATP6V1C1P21283 382 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 PRPH2P23942 346 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 LOXP28300 417 aaPredicted RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 CRHR1P34998 444 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 RAC1P63000 192 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 PPP2R2BQ00005 443 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 OCRLQ01968 901 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 PCLAFQ15004 111 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 CD226Q15762 336 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.98□□□□□ -0.33
SDC1-204ENST00000429035 CTU2Q2VPK5 515 aaKnown RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 STAC2Q6ZMT1 411 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 ESPNLQ6ZVH7 1005 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 MISPQ8IVT2 679 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 CNPY4Q8N129 248 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 TMCO5AQ8N6Q1 288 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 ATP6V1C2Q8NEY4 427 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 PHOSPHO1Q8TCT1 267 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 ROBO4Q8WZ75 1007 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 CDS1Q92903 461 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 GIMAP5Q96F15 307 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 REXO5Q96IC2 774 aaKnown RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 METTL2AQ96IZ6 378 aaKnown RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 ADGRG7Q96K78 797 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 KLHL15Q96M94 604 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 KLHDC3Q9BQ90 382 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 TACO1Q9BSH4 297 aaKnown RBP12.98□□□□□ -0.33
SDC1-204ENST00000429035 HHATLQ9HCP6 504 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 FREM1Q5H8C1 2179 aa12.98□□□□□ -0.33
SDC1-204ENST00000429035 TLN2Q9Y4G6 2542 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 TMEM233B4DJY2 109 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 NID1P14543 1247 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 DDX5P17844 614 aaKnown RBP12.97□□□□□ -0.33
SDC1-204ENST00000429035 KRT4P19013 534 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 IL11P20809 199 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 SHC1P29353 583 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 AGTR1P30556 359 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 ASMTP46597 345 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 SERPINB4P48594 390 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 NR1H2P55055 460 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 TP53BP2Q13625 1128 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 SPDYE7PQ495Y7 208 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 RFTN2Q52LD8 501 aaPredicted RBP12.97□□□□□ -0.33
SDC1-204ENST00000429035 KANK2Q63ZY3 851 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 PRSS57Q6UWY2 283 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 Q6ZSR9 355 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 BEND4Q6ZU67 534 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 R3HCC1LQ7Z5L2 792 aaKnown RBP12.97□□□□□ -0.33
SDC1-204ENST00000429035 ZNF619Q8N2I2 560 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 LRRN4CLQ8ND94 238 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 RFWD2Q8NHY2 731 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 ABHD3Q8WU67 409 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 TWIST2Q8WVJ9 160 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 ARSGQ96EG1 525 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 FAM120BQ96EK7 910 aaKnown RBP12.97□□□□□ -0.33
SDC1-204ENST00000429035 ZNF764Q96H86 408 aaPredicted RBP12.97□□□□□ -0.33
SDC1-204ENST00000429035 FCRL1Q96LA6 429 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 GATA5Q9BWX5 397 aaPredicted RBP12.97□□□□□ -0.33
SDC1-204ENST00000429035 GSX2Q9BZM3 304 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 TUBB1Q9H4B7 451 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 CXorf56Q9H5V9 222 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 PLSCR4Q9NRQ2 329 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 UBQLN4Q9NRR5 601 aa12.97□□□□□ -0.33
SDC1-204ENST00000429035 ACSS1Q9NUB1 689 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms