RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ZNF552Q9H707 407 aaPredicted RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 EXOSC3Q9NQT5 275 aaKnown RBP13.06□□□□□ -0.32
SF3B1-204ENST00000414963 RLIMQ9NVW2 624 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 HPF1Q9NWY4 346 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 CNIH4Q9P003 139 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 NDUFAF4Q9P032 175 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 SLC13A4Q9UKG4 626 aa13.06□□□□□ -0.32
SF3B1-204ENST00000414963 EIF4E2O60573 245 aaKnown RBP13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CSTAP01040 98 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 IFNW1P05000 195 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 FCGR1AP12314 374 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ITGA2P17301 1181 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CASP3P42574 277 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 OR1E2P47887 323 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CYB561P49447 251 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 VLDLRP98155 873 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 MFAP5Q13361 173 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CD226Q15762 336 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 SLC22A10Q63ZE4 541 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 SLC30A6Q6NXT4 461 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 IGFL2Q6UWQ7 119 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 UNQ6494/PRO21346Q6UXR6 183 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 LRRC69Q6ZNQ3 347 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 MARCH3Q86UD3 253 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF227Q86WZ6 799 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ZDHHC21Q8IVQ6 265 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 OR4D11Q8NGI4 311 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 OR5M3Q8NGP4 307 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CNOT9Q92600 299 aaKnown RBP13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF347Q96SE7 839 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 WFDC6Q9BQY6 131 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ANGPTL4Q9BY76 406 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 RTN4RQ9BZR6 473 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 AMBRA1Q9C0C7 1298 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 LAT2Q9GZY6 243 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CPNE5Q9HCH3 593 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 DNAJB12Q9NXW2 375 aaKnown RBP13.05□□□□□ -0.32
SF3B1-204ENST00000414963 GPR83Q9NYM4 423 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 CNOT11Q9UKZ1 510 aaKnown RBP13.05□□□□□ -0.32
SF3B1-204ENST00000414963 RAXQ9Y2V3 346 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ENPP4Q9Y6X5 453 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 ACACAQ13085 2346 aa13.05□□□□□ -0.32
SF3B1-204ENST00000414963 IGLV3-32A0A0A0MS00 114 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 TMEM8BA6NDV4 472 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 A6NL46 340 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 C1QTNF9BB2RNN3 333 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 TAF4O00268 1085 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF264O43296 627 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 NDUFB5O43674 189 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 FMO6PO60774 539 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 BCAS1O75363 584 aaPredicted RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ANGPTL1O95841 491 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 FABP3P05413 133 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 C1QTNF9P0C862 333 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 UBL4AP11441 157 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 TNFRSF1BP20333 461 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 CD96P40200 585 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 CASRP41180 1078 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 PTGDSP41222 190 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ACAA2P42765 397 aaKnown RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 CCL11P51671 97 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF136P52737 540 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 C17orf67Q0P5P2 114 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 SKP2Q13309 424 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 TUBA3CQ13748 450 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 RCN1Q15293 331 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 NPTX1Q15818 432 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 TUBA3EQ6PEY2 450 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF550Q7Z398 422 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 LACC1Q8IV20 430 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF614Q8N883 585 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 TOR1AIP2Q8NFQ8 470 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 OR6T1Q8NGN1 323 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 PHOSPHO1Q8TCT1 267 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 PHF10Q8WUB8 498 aaKnown RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 HAS2Q92819 552 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 ZNF300Q96RE9 604 aaPredicted RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 UTP23Q9BRU9 249 aaKnown RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 POLR2J2Q9GZM3 115 aaKnown RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 POLR2J3Q9H1A7 115 aaKnown RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 RNPEPL1Q9HAU8 725 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 SDHAF3Q9NRP4 125 aa13.04□□□□□ -0.32
SF3B1-204ENST00000414963 STX18Q9P2W9 335 aaKnown RBP13.04□□□□□ -0.32
SF3B1-204ENST00000414963 M0R3H8 397 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 GTPBP1O00178 669 aaKnown RBP13.03□□□□□ -0.32
SF3B1-204ENST00000414963 FAAHO00519 579 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 TPST2O60704 377 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 TIPRLO75663 272 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 NEURL1O76050 574 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 PRSS23O95084 383 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 SNX4O95219 450 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 WDPCPO95876 746 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 ANPEPP15144 967 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 RHCEP18577 417 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 FASP25445 335 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 TMPRSS3P57727 454 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 RGS8P57771 180 aaPredicted RBP13.03□□□□□ -0.32
SF3B1-204ENST00000414963 ATP6AP1Q15904 470 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 RBM45Q8IUH3 476 aaKnown RBP13.03□□□□□ -0.32
SF3B1-204ENST00000414963 CYP4Z2PQ8N1L4 340 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms