RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ZNF696Q9H7X3 374 aa12.95□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF556Q9HAH1 456 aa12.95□□□□□ -0.34
GPNMB-203ENST00000409458 TRBV11-1A0A0K0K1C0 115 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 SERINC4A6NH21 518 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 PLD2O14939 933 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 ABCB7O75027 752 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 UGT2B11O75310 529 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 ADAP00813 363 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 SMIM18P0DKX4 95 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 UGT2B15P54855 530 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 TPD52P55327 224 aaPredicted RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 PLCXD2Q0VAA5 305 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 RAPSNQ13702 412 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 KEAP1Q14145 624 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 OR1Q1Q15612 314 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 KLHL26Q53HC5 615 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 C3orf38Q5JPI3 329 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 KLHL17Q6TDP4 642 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 HSDL2Q6YN16 418 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 C16orf47Q6ZP98 133 aaPredicted RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 Q6ZPB1 254 aaPredicted RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 TIPARPQ7Z3E1 657 aaKnown RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 NKAIN4Q8IVV8 208 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 OR4K5Q8NGD3 323 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 OMA1Q96E52 524 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 HSPBAP1Q96EW2 488 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 ADOQ96SZ5 270 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 POLR2J2Q9GZM3 115 aaKnown RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 POLR2J3Q9H1A7 115 aaKnown RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 ANKRD19PQ9H560 264 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 FOXJ2Q9P0K8 574 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 SCOCQ9UIL1 159 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 MRTO4Q9UKD2 239 aaKnown RBP12.94□□□□□ -0.34
GPNMB-203ENST00000409458 SLC7A7Q9UM01 511 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 MGAT4BQ9UQ53 548 aa12.94□□□□□ -0.34
GPNMB-203ENST00000409458 A0A087WUU8 490 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 LOC102723996A0A087X1L8 192 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TSPAN2O60636 221 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 FMO6PO60774 539 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ICOSLGO75144 302 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 REM1O75628 298 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ABCD3P28288 659 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ELK4P28324 431 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 IL12BP29460 328 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 IFNA8P32881 189 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ACAA2P42765 397 aaKnown RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 EIF3IQ13347 325 aaKnown RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 IL18R1Q13478 541 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 PCOLCEQ15113 449 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CD226Q15762 336 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CTU2Q2VPK5 515 aaKnown RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 FNDC7Q5VTL7 733 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TTC33Q6PID6 262 aaPredicted RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 C6orf15Q6UXA7 325 aaPredicted RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 THAP5Q7Z6K1 395 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CMIPQ8IY22 773 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF786Q8N393 782 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 PARP8Q8N3A8 854 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 GATSQ8NAP1 163 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 OR2Y1Q8NGV0 311 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 SLC38A4Q969I6 547 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 HOXD1Q9GZZ0 328 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 EVA1AQ9H8M9 152 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 UBQLN4Q9NRR5 601 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 NDRG4Q9ULP0 352 aaKnown RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 GMPPBQ9Y5P6 360 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CFAP54Q96N23 3096 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 EXPH5Q8NEV8 1989 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TRAPPC13A5PLN9 417 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TMEM200CA6NKL6 621 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 H3BNH8 94 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 LYPD3O95274 346 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CSTAP01040 98 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 MMP11P24347 488 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 GSSP48637 474 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ISL1P61371 349 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 RPP38P78345 283 aaKnown RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CD47Q08722 323 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TARDBPQ13148 414 aaKnown RBP eCLIP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 APOOLQ6UXV4 268 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF730Q6ZMV8 503 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 WDR88Q6ZMY6 472 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ZER1Q7Z7L7 766 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 MEX3DQ86XN8 651 aaKnown RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CCDC71Q8IV32 467 aaPredicted RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 NLGN4XQ8N0W4 816 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF527Q8NB42 609 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 NUBPLQ8TB37 319 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 THAP3Q8WTV1 239 aaPredicted RBP12.93□□□□□ -0.34
GPNMB-203ENST00000409458 CT55Q8WUE5 264 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TMEM255BQ8WV15 326 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 TP53INP1Q96A56 240 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 PRSS27Q9BQR3 290 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 ZNF559Q9BR84 538 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 DGCR6LQ9BY27 220 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 SPRY4Q9C004 299 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 REV1Q9UBZ9 1251 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 MYRFQ9Y2G1 1151 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 PCDHGA3Q9Y5H0 932 aa12.93□□□□□ -0.34
GPNMB-203ENST00000409458 SDK2Q58EX2 2172 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms