RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CHDHQ8NE62 594 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 NTMT1Q9BV86 223 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 POLR2J2Q9GZM3 115 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 MBNL1Q9NR56 388 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CENPMQ9NSP4 180 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RPL36Q9Y3U8 105 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 hCG_1809904A0A1W2PP81 198 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 A0A1W2PPE2 198 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 A0A1W2PR64 198 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 A0A1W2PRQ8 180 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 A0A1W2PRV1 198 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 D6RAR5 112 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 DSCR3O14972 297 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 XPNPEP2O43895 674 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FADS1O60427 444 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SLC19A2O60779 497 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF43P17038 809 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CD97P48960 835 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 UGT8Q16880 541 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PAN3Q58A45 887 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PRSS36Q5K4E3 855 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PRAMEF20Q5VT98 475 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 TNFAIP8L2Q6P589 184 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF773Q6PK81 442 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF572Q7Z3I7 529 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ANKRD13BQ86YJ7 626 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SLC30A8Q8IWU4 369 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF440Q8IYI8 595 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SVBPQ8N300 66 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GALNT16Q8N428 558 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PACRGLQ8N7B6 248 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 OR1J2Q8NGS2 313 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PGAP3Q96FM1 320 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 MSLNLQ96KJ4 702 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 DUSP26Q9BV47 211 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 A0A096LPI6 279 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RNF212BA8MTL3 300 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 G3V3Y1 287 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ANKRD28O15084 1053 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ADAMDEC1O15204 470 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 TOX4O94842 621 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RPS23P62266 143 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RPL23AP62750 156 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 KCTD9Q7L273 389 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RBM15BQ8NDT2 890 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 OR9A4Q8NGU2 314 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SPOCK2Q92563 424 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CPNE2Q96FN4 548 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF347Q96SE7 839 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 EGLN1Q9GZT9 426 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 HAPLN2Q9GZV7 340 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 IL1RAPQ9NPH3 570 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ENAMQ9NRM1 1142 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 U3KQV3 271 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF831Q5JPB2 1677 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 C17orf113A0A1B0GUU1 675 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GGT3PA6NGU5 568 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ARPC2O15144 300 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ANGPTL7O43827 346 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 DPP4P27487 766 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GGT2P36268 569 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 HTD2P86397 168 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 COL9A2Q14055 689 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GNMTQ14749 295 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 DCDC5Q6ZRR9 648 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 TMED4Q7Z7H5 227 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 OR4N5Q8IXE1 308 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF595Q8IYB9 648 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PRR22Q8IZ63 422 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CLIP4Q8N3C7 705 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 DCBLD1Q8N8Z6 715 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF436Q9C0F3 470 aaPredicted RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 NELFAQ9H3P2 528 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 EBF2Q9HAK2 575 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SMURF1Q9HCE7 757 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 NIT2Q9NQR4 276 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SDHAF2Q9NX18 166 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CD300AQ9UGN4 299 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PCDHGB1Q9Y5G3 927 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ACTL7AQ9Y615 435 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 OR7A17O14581 309 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 HCN1O60741 890 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CHRNB2P17787 502 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 LGALS4P56470 323 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 ARHGAP19Q14CB8 494 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RAB35Q15286 201 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 C21orf62-AS1Q17RA5 79 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 AVPI1Q5T686 147 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 RHOUQ7L0Q8 258 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 TRAPPC6BQ86SZ2 158 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SYVN1Q86TM6 617 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SLC7A5P1Q8MH63 180 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 TCEANCQ8N8B7 351 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 OR56B2PQ8NGI1 322 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 SLC30A3Q99726 388 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 CCDC32Q9BV29 185 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 PAPOLGQ9BWT3 736 aaKnown RBP6.86□□□□□ -1.31
SCN9A-202ENST00000409435 HIPK2Q9H2X6 1198 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 FGF22Q9HCT0 170 aa6.86□□□□□ -1.31
SCN9A-202ENST00000409435 GSKIPQ9P0R6 139 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms