RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TRNT1Q96Q11 434 aaKnown RBP8.42□□□□□ -1.06
VPS53-203ENST00000401468 GAL3ST4Q96RP7 486 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 SLX1AQ9BQ83 275 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 SLC39A3Q9BRY0 314 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 ZNF350Q9GZX5 532 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 IL1RL2Q9HB29 575 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 NDE1Q9NXR1 346 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 TMEM181Q9P2C4 612 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 TINAGQ9UJW2 476 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 CBLCQ9ULV8 474 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 LIPT1Q9Y234 373 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 CHCHD2Q9Y6H1 151 aaPredicted RBP8.42□□□□□ -1.06
VPS53-203ENST00000401468 KCNE3Q9Y6H6 103 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 MPDZO75970 2070 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 PDZD2O15018 2839 aa8.42□□□□□ -1.06
VPS53-203ENST00000401468 TRAV17A0A0B4J275 112 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 GXYLT2A0PJZ3 443 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 ANKRD33BA6NCL7 494 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 EVPLLA8MZ36 301 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 NPIPA5E9PKD4 350 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 G3V3Y1 287 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 NME4O00746 187 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 KIAA0513O60268 411 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 DNAJA2O60884 412 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 OR6B1O95007 311 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 RASAL1O95294 804 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 OR12D1P0DN82 309 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 ESRRAP11474 423 aaPredicted RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 EDN3P14138 238 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 RPS4Y1P22090 263 aaKnown RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 GABRA3P34903 492 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 TMED10P49755 219 aaKnown RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 NRG3P56975 720 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 PCBP3P57721 371 aaKnown RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 DSTNP60981 165 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 PSME3P61289 254 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 RAC1P63000 192 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 POU6F2P78424 691 aaPredicted RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 RBBP4Q09028 425 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 ART3Q13508 389 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 OR1C1Q15619 314 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 RABL3Q5HYI8 236 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 DCST2Q5T1A1 773 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 ZNF324BQ6AW86 544 aaPredicted RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 TNFAIP8L2Q6P589 184 aaPredicted RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 NUP54Q7Z3B4 507 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SZRD1Q7Z422 152 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 GALNTL5Q7Z4T8 443 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 RBM15BQ8NDT2 890 aaKnown RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 PNPT1Q8TCS8 783 aaKnown RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 GPR151Q8TDV0 419 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 PAQR8Q8TEZ7 354 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SLC38A5Q8WUX1 472 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 PIK3R3Q92569 461 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 NR4A3Q92570 626 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SLC9A6Q92581 669 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 TMBIM1Q969X1 311 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 OMA1Q96E52 524 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SCMH1Q96GD3 660 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SGCZQ96LD1 299 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 ZNF583Q96ND8 569 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 FRMD6Q96NE9 622 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 COL21A1Q96P44 957 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SDF2Q99470 211 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 YIPF4Q9BSR8 244 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 G6PC3Q9BUM1 346 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 BCL2L10Q9HD36 194 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 SPAG4Q9NPE6 437 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 EXD2Q9NVH0 621 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 CMTM6Q9NX76 183 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 TAS2R1Q9NYW7 299 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.41□□□□□ -1.06
VPS53-203ENST00000401468 NPIPA1Q9UND3 350 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 CSMD1Q96PZ7 3565 aa8.41□□□□□ -1.06
VPS53-203ENST00000401468 CELSR1Q9NYQ6 3014 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 WIPF3A6NGB9 483 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 FAM220BPB1ANY3 271 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 PRSS44E7EML9 344 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 CCL21O00585 134 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 UGT2B11O75310 529 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 ATP5HO75947 161 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 CHRM4P08173 479 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 PTGDSP41222 190 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 CRATP43155 626 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 CPA2P48052 419 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 CYB561P49447 251 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 SLC7A2P52569 658 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 GAS1P54826 345 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 PSMD4P55036 377 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 EEFSECP57772 596 aaKnown RBP8.4□□□□□ -1.06
VPS53-203ENST00000401468 GPR85P60893 370 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 PLCXD2Q0VAA5 305 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 SNTA1Q13424 505 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 VEZF1Q14119 521 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 EFR3AQ14156 821 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 ZNF141Q15928 474 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 NNATQ16517 81 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 C3AR1Q16581 482 aa8.4□□□□□ -1.06
VPS53-203ENST00000401468 DECR1Q16698 335 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms