RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ZNF614Q8N883 585 aa23.3■■□□□ 1.32
SHOX2-201ENST00000389589 CRELD1Q96HD1 420 aa23.3■■□□□ 1.32
SHOX2-201ENST00000389589 EGLN3Q9H6Z9 239 aa23.3■■□□□ 1.32
SHOX2-201ENST00000389589 SRPK3Q9UPE1 567 aa23.3■■□□□ 1.32
SHOX2-201ENST00000389589 RPL36Q9Y3U8 105 aaKnown RBP23.3■■□□□ 1.32
SHOX2-201ENST00000389589 U3KQA8 63 aa23.3■■□□□ 1.32
SHOX2-201ENST00000389589 LAMA1P25391 3075 aa23.3■■□□□ 1.32
SHOX2-201ENST00000389589 A0A1W2PPW3 197 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 NFATC3Q12968 1075 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 FGFBP1Q14512 234 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 CPEB4Q17RY0 729 aaKnown RBP eCLIP23.29■■□□□ 1.32
SHOX2-201ENST00000389589 ARHGAP40Q5TG30 622 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 BCORP1Q8N888 145 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 CNOT9Q92600 299 aaKnown RBP23.29■■□□□ 1.32
SHOX2-201ENST00000389589 ZC3H10Q96K80 434 aaKnown RBP23.29■■□□□ 1.32
SHOX2-201ENST00000389589 SLC46A1Q96NT5 459 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 CDCA4Q9BXL8 241 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 PLA2G12AQ9BZM1 189 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 SELENONQ9NZV5 590 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 CFIP05156 583 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 LCKP06239 509 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 HOXD12P35452 270 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 ACY1Q03154 408 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 IRF3Q14653 427 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 ACSM5Q6NUN0 579 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 CLDN22Q8N7P3 220 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 TEX12Q9BXU0 123 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 GAREM1Q9H706 876 aa23.29■■□□□ 1.32
SHOX2-201ENST00000389589 MKKSQ9NPJ1 570 aaPredicted RBP23.29■■□□□ 1.32
SHOX2-201ENST00000389589 GABARAPO95166 117 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 LYPD3O95274 346 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 NTN1O95631 604 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 SLC37A1P57057 533 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 RHAGQ02094 409 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 PLAURQ03405 335 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 ELAVL1Q15717 326 aaKnown RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 PERM1Q5SV97 790 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 PLAG1Q6DJT9 500 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 ZNF574Q6ZN55 896 aaPredicted RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 RABEPKQ7Z6M1 372 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 MEX3DQ86XN8 651 aaKnown RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 POGLUT1Q8NBL1 392 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 OIT3Q8WWZ8 545 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 NAT6Q93015 286 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 SLC38A2Q96QD8 506 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 TRIM2Q9C040 744 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 DSN1Q9H410 356 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 SLC24A3Q9HC58 644 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 DNAJB12Q9NXW2 375 aaKnown RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 IL20Q9NYY1 176 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 DNAJC27Q9NZQ0 273 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 ATXN7L1Q9ULK2 861 aaPredicted RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 CLCA3PQ9Y6N3 262 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 USP34Q70CQ2 3546 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 FER1L5A0AVI2 2057 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 SYNDIG1LA6NDD5 238 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 BCAS1O75363 584 aaPredicted RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 ATXN8OSP0DMR3 200 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 RORAP35398 523 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 RNF144AP50876 292 aaPredicted RBP23.28■■□□□ 1.32
SHOX2-201ENST00000389589 EFNB1P98172 346 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 ZNF550Q7Z398 422 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 P2RY8Q86VZ1 359 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 OR4D9Q8NGE8 314 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 TMEM239Q8WW34 195 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 TSLPQ969D9 159 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 FSCN3Q9NQT6 498 aa23.28■■□□□ 1.32
SHOX2-201ENST00000389589 TCRBV16S1A1N1A0A5B0 115 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 POLR1CO15160 346 aaPredicted RBP23.27■■□□□ 1.32
SHOX2-201ENST00000389589 TLX2O43763 284 aaPredicted RBP23.27■■□□□ 1.32
SHOX2-201ENST00000389589 PRKYO43930 277 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 PIP5K1CO60331 668 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 CNOT3O75175 753 aaKnown RBP23.27■■□□□ 1.32
SHOX2-201ENST00000389589 GPR4P46093 362 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 SNAPC1Q16533 368 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 ARHGAP22Q7Z5H3 698 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 CEP76Q8TAP6 659 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 HS6ST2Q96MM7 605 aa23.27■■□□□ 1.32
SHOX2-201ENST00000389589 PPICP45877 212 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 CCL7P80098 99 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 CTF1Q16619 201 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 TMPRSS9Q7Z410 1059 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 OR8D4Q8NGM9 314 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 ART5Q96L15 291 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 TBC1D23Q9NUY8 699 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 ZNF223Q9UK11 482 aaPredicted RBP23.26■■□□□ 1.31
SHOX2-201ENST00000389589 TMEM5Q9Y2B1 443 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 CDH10Q9Y6N8 788 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 RPLP0P05388 317 aaKnown RBP23.26■■□□□ 1.31
SHOX2-201ENST00000389589 NNATQ16517 81 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 C1orf189Q5VU69 101 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 RHBDD2Q6NTF9 364 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 ZNF620Q6ZNG0 422 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 TMEM163Q8TC26 289 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 HOXD1Q9GZZ0 328 aa23.26■■□□□ 1.31
SHOX2-201ENST00000389589 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP23.26■■□□□ 1.31
SHOX2-201ENST00000389589 TECTAO75443 2155 aa23.25■■□□□ 1.31
SHOX2-201ENST00000389589 A0A0B4J2E0 115 aa23.25■■□□□ 1.31
SHOX2-201ENST00000389589 A0A1B0GX12 115 aa23.25■■□□□ 1.31
SHOX2-201ENST00000389589 CHP2O43745 196 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms