RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 CHST4Q8NCG5 386 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 SPATA2Q9UM82 520 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 HMGN4O00479 90 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 ANKRD28O15084 1053 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 DHFRP00374 187 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 RHAGQ02094 409 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 CCINQ13939 588 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 PTOV1Q86YD1 416 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 GPALPP1Q8IXQ4 340 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 SMRP1Q8NCR6 262 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 THAP4Q8WY91 577 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 OR6C1Q96RD1 312 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 NIPSNAP1Q9BPW8 284 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 TMEM138Q9NPI0 162 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 TCRBV5S2A0A599 114 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 SYT5O00445 386 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 FGF17O60258 216 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 BRINP1O60477 761 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 PNMTP11086 282 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 ACVR1BP36896 505 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 LSAMPQ13449 338 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 KCNAB1Q14722 419 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 DUSP5Q16690 384 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 RBM45Q8IUH3 476 aaKnown RBP13.54□□□□□ -0.24
TCOF1-202ENST00000377797 CARD8Q9Y2G2 431 aa13.54□□□□□ -0.24
TCOF1-202ENST00000377797 C12orf71A8MTZ7 269 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SSNA1O43805 119 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 CPNE6O95741 557 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 GRPRP30550 384 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 STT3AP46977 705 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SLC6A9P48067 706 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SOX2P48431 317 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 TUBA3EQ6PEY2 450 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 DGLUCYQ7Z3D6 616 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 ZFAND2BQ8WV99 257 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 ATOH1Q92858 354 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 HDHD5Q9BXW7 423 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 THSD1Q9NS62 852 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 HEMK1Q9Y5R4 338 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 FAM183AA6NL82 134 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 HSD11B1P28845 292 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 CD1CP29017 333 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 GPLD1P80108 840 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 PDE7AQ13946 482 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 RAET1LQ5VY80 246 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 TSSK4Q6SA08 328 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 PAQR7Q86WK9 346 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 LNX2Q8N448 690 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 ORAI3Q9BRQ5 295 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 VDAC3Q9Y277 283 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 IER3IP1Q9Y5U9 82 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 MTCH2Q9Y6C9 303 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SPAG17Q6Q759 2223 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 A0A075B6Q4 140 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 H0YC42 278 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 GALR3O60755 368 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SLC6A8P48029 635 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 TSPAN31Q12999 210 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 LEG1Q6P5S2 330 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 IGFN1Q86VF2 1251 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 HPS1Q92902 700 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 CNRIP1Q96F85 164 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SENP5Q96HI0 755 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 EGLN3Q9H6Z9 239 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 FOLH1BQ9HBA9 442 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 TESQ9UGI8 421 aaKnown RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 BCAS1O75363 584 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 OR2B6P58173 313 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 C1orf216Q8TAB5 229 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 ASB15Q8WXK1 588 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 NKD1Q969G9 470 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 SLC30A2Q9BRI3 323 aa13.53□□□□□ -0.24
TCOF1-202ENST00000377797 TMA7Q9Y2S6 64 aaKnown RBP13.53□□□□□ -0.24
TCOF1-202ENST00000377797 H3BMQ9 156 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 SLC15A1P46059 708 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 SLC14A1Q13336 389 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 BICRALQ6AI39 1079 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 OR5M10Q6IEU7 315 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 RIMKLAQ8IXN7 391 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 OR2T4Q8NH00 348 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 COG8Q96MW5 612 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 OR1F2PQ96R84 312 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 GPC6Q9Y625 555 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-202ENST00000377797 TRAV27A0A087WT01 109 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 A0A1W2PPK0 400 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 A0A1W2PRQ8 180 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 IDH3BO43837 385 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 MRPS14O60783 128 aaKnown RBP13.52□□□□□ -0.24
TCOF1-202ENST00000377797 ELAVL4P26378 380 aaKnown RBP13.52□□□□□ -0.24
TCOF1-202ENST00000377797 PRKAR1BP31321 381 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 FAUP35544 74 aaKnown RBP13.52□□□□□ -0.24
TCOF1-202ENST00000377797 CAPZBP47756 277 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 GFERP55789 205 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 MAPK14Q16539 360 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 KCTD18Q6PI47 426 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-202ENST00000377797 UBE2Q1Q7Z7E8 422 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 UBALD2Q8IYN6 164 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 HRASLS5Q96KN8 279 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 NRTNQ99748 197 aa13.52□□□□□ -0.24
TCOF1-202ENST00000377797 SLC22A7Q9Y694 548 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms