RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MEAF6Q9HAF1 191 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 EXOSC3Q9NQT5 275 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 IL17CQ9P0M4 197 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RSPH14Q9UHP6 348 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ANAPC7Q9UJX3 599 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 SMC3Q9UQE7 1217 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 SAGE2PA6NJ88 616 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 A8MUI8 341 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CLDN5O00501 218 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CTAGE5O15320 804 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 GJB5O95377 273 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 SLC2A10O95528 541 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 IGF1P05019 195 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 KRT8P05787 483 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CT45A10P0DMU9 189 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RPA2P15927 270 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 H2AFXP16104 143 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ATP5A1P25705 553 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 IL2RGP31785 369 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 MAGEA9P43362 315 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 GNPDA1P46926 289 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RPL34P49207 117 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ACADVLP49748 655 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ERVPABLB-1P60509 514 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RPL8P62917 257 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 IGLV3-21P80748 117 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 PJVKQ0ZLH3 352 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CAPRIN1Q14444 709 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ATXN7L3Q14CW9 347 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 PDK4Q16654 411 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CYP51A1Q16850 503 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RABGAP1LQ5R372 815 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 GCNT7Q6ZNI0 430 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 KIAA1328Q86T90 577 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 SERINC5Q86VE9 423 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 MCOLN2Q8IZK6 566 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 LINC01561Q8N1V8 128 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ZSCAN4Q8NAM6 433 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 OR2T33Q8NG76 320 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 TFB1MQ8WVM0 346 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 TRIM44Q96DX7 344 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 SDSLQ96GA7 329 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RMND5AQ9H871 391 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 MRPL39Q9NYK5 338 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 Q9UF83 564 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 GMPPBQ9Y5P6 360 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ATP10DQ9P241 1426 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PPIAL4CA0A0B4J2A2 164 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ESYT2A0FGR8 921 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 FRG2CA6NGY1 282 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 H0YCG3 227 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 GMFGO60234 142 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TBX19O60806 448 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 RAMP1O60894 148 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TRIM3O75382 744 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 B3GAT3O94766 335 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 OPN1LWP04000 364 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PPIAL4GP0DN37 164 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PGAM2P15259 253 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PSMA2P25787 234 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CALRP27797 417 aaKnown RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ADSSP30520 456 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 RGS4P49798 205 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 LIM2P55344 173 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 EWSR1Q01844 656 aaKnown RBP eCLIP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF154Q13106 437 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SERTAD2Q14140 314 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SELPLGQ14242 412 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 TPD52L1Q16890 204 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 FAM120AOSQ5T036 256 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 MARC1Q5VT66 337 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 OR8G2PQ6IF36 304 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ANKRD37Q7Z713 158 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CSNK1A1LQ8N752 337 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 RPL3LQ92901 407 aaKnown RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 B3GALT6Q96L58 329 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 FEM1AQ9BSK4 669 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 OPN3Q9H1Y3 402 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 MIEF1Q9NQG6 463 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SENP1Q9P0U3 644 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 GALPQ9UBC7 116 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 XPO7Q9UIA9 1087 aaKnown RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CRLS1Q9UJA2 301 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 GSTK1Q9Y2Q3 226 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SPACA6W5XKT8 324 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 GSAPA4D1B5 854 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 OR6C65A6NJZ3 312 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 PPIAL4DF5H284 164 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 FCN1O00602 326 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 SLC17A2O00624 439 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 ZSCAN12O43309 604 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 BCAS1O75363 584 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-206ENST00000376646 KIAA0754O94854 1291 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 F10P00742 488 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 UGT2B4P06133 528 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 HBQ1P09105 142 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 BCKDHAP12694 445 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 CPN1P15169 458 aa1.55□□□□□ -2.16
VPS13A-206ENST00000376646 UQCRC2P22695 453 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms