RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 DYRK3O43781 588 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 PIP5K1CO60331 668 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 FMO6PO60774 539 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 CXCR4P61073 352 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 TOP3AQ13472 1001 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 NDUFAF6Q330K2 333 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 DESI1Q6ICB0 168 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF730Q6ZMV8 503 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 ANKRD37Q7Z713 158 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 KIF18BQ86Y91 864 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 ACOT11Q8WXI4 607 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 LCORQ96JN0 433 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 SPSB2Q99619 263 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 CXorf56Q9H5V9 222 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 C14orf105Q9NVL8 296 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 CNIH4Q9P003 139 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 TESQ9UGI8 421 aaKnown RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 ENOPH1Q9UHY7 261 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 SMIM31A0A1B0GVY4 71 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 CDC14CA4D256 554 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 TRAPPC13A5PLN9 417 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 PTGES3LE9PB15 166 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 MEN1O00255 615 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 POLR1CO15160 346 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 HBQ1P09105 142 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 SLC35A2P78381 396 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 XAF1Q6GPH4 301 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 RBM44Q6ZP01 1051 aaKnown RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 KCTD8Q6ZWB6 473 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 BPHLQ86WA6 291 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF441Q8N8Z8 693 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 C7orf57Q8NEG2 295 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 FAM46AQ96IP4 442 aaKnown RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 GAL3ST4Q96RP7 486 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 DUSP21Q9H596 190 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 ZNF223Q9UK11 482 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-202ENST00000372405 CFL2Q9Y281 166 aa12.7□□□□□ -0.38
PTPRF-202ENST00000372405 C2orf92A0A1B0GVN3 265 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 KLF4O43474 513 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ABCB7O75027 752 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 IL33O95760 270 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 HEXBP07686 556 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 MC2RQ01718 297 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ALDH6A1Q02252 535 aaKnown RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 COX10Q12887 443 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 PMS2P3Q13401 168 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 KLHL26Q53HC5 615 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 FNDC7Q5VTL7 733 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 FAM69BQ5VUD6 431 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 BROXQ5VW32 411 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 SLX4IPQ5VYV7 408 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 MRPL14Q6P1L8 145 aaKnown RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 APOOLQ6UXV4 268 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 MBOAT2Q6ZWT7 520 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 NRMQ8IXM6 262 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 PRR22Q8IZ63 422 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 SPARTQ8N0X7 666 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 POGLUT1Q8NBL1 392 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 NFAM1Q8NET5 270 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 PLA2G12AQ9BZM1 189 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 POLR2J2Q9GZM3 115 aaKnown RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 WWTR1Q9GZV5 400 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 SLC26A1Q9H2B4 701 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 DSN1Q9H410 356 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ARMC7Q9H6L4 198 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 BLOC1S6Q9UL45 172 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 SERINC4A6NH21 518 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 H3BN98 237 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 CPNE3O75131 537 aaKnown RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ALOX12BO75342 701 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 IFNA8P32881 189 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 CD226Q15762 336 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 C12orf73Q69YU5 71 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 SLCO6A1Q86UG4 719 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 IQCF1Q8N6M8 205 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 APCDD1LQ8NCL9 501 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ART5Q96L15 291 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 WDR77Q9BQA1 342 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-202ENST00000372405 EGLN3Q9H6Z9 239 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 POLR1BQ9H9Y6 1135 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 FBXO8Q9NRD0 319 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 ERVK-18Q9QC07 812 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 CEPT1Q9Y6K0 416 aa12.69□□□□□ -0.38
PTPRF-202ENST00000372405 EXPH5Q8NEV8 1989 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 A0A0B4J2E0 115 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 A0A1B0GX12 115 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 H3BSA7 217 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 CBFA2T3O75081 653 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 GPR4P46093 362 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 PSMD4P55036 377 aaKnown RBP12.68□□□□□ -0.38
PTPRF-202ENST00000372405 TSPAN31Q12999 210 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 NEDD8Q15843 81 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 FAM199XQ6PEV8 388 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-202ENST00000372405 DEPDC4Q8N2C3 294 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 FAM71CQ8NEG0 241 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 TOR1AIP2Q8NFQ8 470 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 OR8D4Q8NGM9 314 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 PIGXQ8TBF5 258 aa12.68□□□□□ -0.38
PTPRF-202ENST00000372405 GNPDA2Q8TDQ7 276 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms