RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RAD51CO43502 376 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 OR4F21O95013 312 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 NGFRP08138 427 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 IFI6P09912 130 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 PSMA4P25789 261 aaKnown RBP12.3□□□□□ -0.44
VPS29-201ENST00000360579 NTSP30990 170 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 PHBP35232 272 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 EIF1P41567 113 aaKnown RBP12.3□□□□□ -0.44
VPS29-201ENST00000360579 CDH11P55287 796 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 GNG11P61952 73 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 GUCY2DQ02846 1103 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 TSC22D1Q15714 1073 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 ZNF239Q16600 458 aaKnown RBP12.3□□□□□ -0.44
VPS29-201ENST00000360579 PLPPR5Q32ZL2 321 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 GRAMD1BQ3KR37 738 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 ELOA3BQ3SY89 546 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 VPS26BQ4G0F5 336 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 CYB5R2Q6BCY4 276 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 APOOLQ6UXV4 268 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 RPS27LQ71UM5 84 aaKnown RBP12.3□□□□□ -0.44
VPS29-201ENST00000360579 TRABD2AQ86V40 505 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 MISPQ8IVT2 679 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 MMGT1Q8N4V1 131 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 CDYL2Q8N8U2 506 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 ELOA3Q8NG57 546 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 SLC9A6Q92581 669 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 MUCL1Q96DR8 90 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 KLHL15Q96M94 604 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 ACPTQ9BZG2 426 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 MIEF1Q9NQG6 463 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 MED17Q9NVC6 651 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 TAS2R7Q9NYW3 318 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 ZNF225Q9UK10 706 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 B3GALT5Q9Y2C3 310 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 CCDC151A5D8V7 595 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 GJE1A6NN92 205 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 UBFD1O14562 309 aaKnown RBP12.29□□□□□ -0.44
VPS29-201ENST00000360579 ADAP00813 363 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 OPN1LWP04000 364 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 ANXA4P09525 319 aaPredicted RBP12.29□□□□□ -0.44
VPS29-201ENST00000360579 TSPAN8P19075 237 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 ELK4P28324 431 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 HMOX2P30519 316 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 GABRA3P34903 492 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 HSD17B3P37058 310 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 MAGEA12P43365 314 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 CLCQ05315 142 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 ZNF763Q0D2J5 394 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 SLC29A2Q14542 456 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 PPA1Q15181 289 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 BHLHA15Q7RTS1 189 aaPredicted RBP12.29□□□□□ -0.44
VPS29-201ENST00000360579 TUSC5Q8IXB3 177 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 LILRA2Q8N149 483 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 CEP112Q8N8E3 955 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 METTL6Q8TCB7 284 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 ABHD3Q8WU67 409 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 ELP4Q96EB1 424 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 APIPQ96GX9 242 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 RAB17Q9H0T7 212 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 TMEM185BQ9H7F4 350 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 SIRT5Q9NXA8 310 aa12.29□□□□□ -0.44
VPS29-201ENST00000360579 WBP11Q9Y2W2 641 aaKnown RBP12.29□□□□□ -0.44
VPS29-201ENST00000360579 PRR14LQ5THK1 2151 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 A8MT66 165 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 SHISA9B4DS77 424 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 PRKD3O94806 890 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 YES1P07947 543 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 HPGDP15428 266 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 CHN1P15882 459 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 SRD5A1P18405 259 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 LCN1P31025 176 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 C21orf58P58505 322 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 SLC18A2Q05940 514 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 C2orf80Q0P641 193 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 RAB35Q15286 201 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 STK11Q15831 433 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 GLE1Q53GS7 698 aaKnown RBP12.28□□□□□ -0.44
VPS29-201ENST00000360579 SEZ6L2Q6UXD5 910 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 Q6ZT83 130 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 GPRIN3Q6ZVF9 776 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 NUFIP2Q7Z417 695 aaKnown RBP12.28□□□□□ -0.44
VPS29-201ENST00000360579 ATG4DQ86TL0 474 aaPredicted RBP12.28□□□□□ -0.44
VPS29-201ENST00000360579 P2RY8Q86VZ1 359 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 SLC43A2Q8N370 569 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 SPATA4Q8NEY3 305 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 GPR151Q8TDV0 419 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 AMDHD1Q96NU7 426 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 ZNF382Q96SR6 550 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 CACNG6Q9BXT2 260 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 EBPLQ9BY08 206 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 GLIPR2Q9H4G4 154 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 STK38LQ9Y2H1 464 aa12.28□□□□□ -0.44
VPS29-201ENST00000360579 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.28□□□□□ -0.442e-11■■■■■ 31.7
VPS29-201ENST00000360579 ABCD4O14678 606 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 RAMP1O60894 148 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 SUPT7LO94864 414 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 OXSR1O95747 527 aaPredicted RBP12.27□□□□□ -0.45
VPS29-201ENST00000360579 IGKV1D-16P01601 117 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 INHBAP08476 426 aa12.27□□□□□ -0.45
VPS29-201ENST00000360579 CSF3P09919 207 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms