RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 POT1Q9NUX5 634 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 CDH10Q9Y6N8 788 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.98■□□□□ 0.47
COL9A3-201ENST00000343916 GALR3O60755 368 aaPredicted RBP17.98■□□□□ 0.47
COL9A3-201ENST00000343916 GABRA3P34903 492 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 CAV3P56539 151 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 FXYD6P3P58550 94 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 FABP5Q01469 135 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 OR1Q1Q15612 314 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF79Q15937 498 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF791Q3KP31 576 aaPredicted RBP17.98■□□□□ 0.47
COL9A3-201ENST00000343916 EIPR1Q53HC9 387 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 TMPRSS11AQ6ZMR5 421 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 TAF8Q7Z7C8 310 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 CPOQ8IVL8 374 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 NACC2Q96BF6 587 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 UBQLN3Q9H347 655 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 CBLCQ9ULV8 474 aa17.98■□□□□ 0.47
COL9A3-201ENST00000343916 EXOSC1Q9Y3B2 195 aaKnown RBP17.98■□□□□ 0.47
COL9A3-201ENST00000343916 A0A0J9YY10 115 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ZC3H12DA2A288 527 aaKnown RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 A6NL46 340 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 DYRK3O43781 588 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 PLOD3O60568 738 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 RDH16O75452 317 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 SNX4O95219 450 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 THBS1P07996 1170 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 NID1P14543 1247 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 MAKP20794 623 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ATP6V1E1P36543 226 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 UBE2IP63279 158 aaKnown RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 INSL4Q14641 139 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 SLC35F1Q5T1Q4 408 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 CA13Q8N1Q1 262 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF485Q8NCK3 441 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 UFD1Q92890 307 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 RFKQ969G6 155 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 CCDC3Q9BQI4 270 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 OR52D1Q9H346 318 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 MED20Q9H944 212 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ABCB9Q9NP78 766 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 WDR70Q9NW82 654 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 SPACA6W5XKT8 324 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 TRAPPC13A5PLN9 417 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 H3BQ06 376 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 STK25O00506 426 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 RPS4Y1P22090 263 aaKnown RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 PLAURQ03405 335 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 MGAT2Q10469 447 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 EIF2B5Q13144 721 aaKnown RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 TPBGQ13641 420 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 EOGTQ5NDL2 527 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 RNF44Q7L0R7 432 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF614Q8N883 585 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 CDRT4Q8N9R6 151 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF486Q96H40 463 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 KCTD7Q96MP8 289 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 TP63Q9H3D4 680 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 MARCH7Q9H992 704 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 PLEKHB1Q9UF11 243 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-201ENST00000343916 TBC1D24Q9ULP9 559 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 ENTPD2Q9Y5L3 495 aa17.97■□□□□ 0.47
COL9A3-201ENST00000343916 LAMA1P25391 3075 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 IRGMA1A4Y4 181 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 CDHR4A6H8M9 788 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 IL1AP01583 271 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 DBIP07108 87 aaKnown RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 COPZ1P61923 177 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 BAK1Q16611 211 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 PLBD1Q6P4A8 553 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 ABI3BPQ7Z7G0 1075 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 SIRT6Q8N6T7 355 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 OR9A4Q8NGU2 314 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 SECISBP2Q96T21 854 aaKnown RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF649Q9BS31 505 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 CCDC32Q9BV29 185 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 TMED9Q9BVK6 235 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 TEX12Q9BXU0 123 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 DUSP22Q9NRW4 184 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 CYP8B1Q9UNU6 501 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 IQCMA0A1B0GVH7 501 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 LINC00854A0A1B0GVQ3 168 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 SLC30A4O14863 429 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 IFI30P13284 250 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 ST6GAL1P15907 406 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 DEFA1P59665 94 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 DEFA3P59666 94 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 EXOSC6Q5RKV6 272 aaKnown RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 RSBN1Q5VWQ0 802 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 NXNL2Q5VZ03 156 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 Q6ZS52 159 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 CAMKK1Q8N5S9 505 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 ZNF655Q8N720 491 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 OR51G2Q8NGK0 314 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 TMEM239Q8WW34 195 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 ANKRD9Q96BM1 317 aaPredicted RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 KATNB1Q9BVA0 655 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 TBC1D17Q9HA65 648 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 NEK6Q9HC98 313 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 TIGARQ9NQ88 270 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms